@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VT29: (2017-12-11 )
MSFTRINGVLHAEQCSLEQLAQQFGTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSNIAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNVESYAELDRIQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQYAASLPNLEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGVCYKDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNFAIIDAAMNDLIRPALYEAWMDIQPVVPRTDTEEKTWDLVGAICETGDFIGKDRSLALQENDLLTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLIRERETVESLWEKERLLPEE

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_A_2(2QGH)
DCDA_HELPX
[Raw transfer]




PLP_A_2(2QGH)
DCDA_HELPX
[Raw transfer]




LYS_A_3(3C5Q)
DCDA_HELPX
[Raw transfer]




AZ1_D_4(1TUF)
DCDA_METJA
[Raw transfer]




LYS_A_3(1KO0)
DCDA_ECOLI
[Raw transfer]




GOL_A_2(5GJN)
DCLO_SELRU
[Raw transfer]




PLP_A_2(2YXX)
DCDA_THEMA
[Raw transfer]




PLP_A_2(2YXX)
DCDA_THEMA
[Raw transfer]




PLP_A_2(3C5Q)
DCDA_HELPX
[Raw transfer]




PLP_A_2(3C5Q)
DCDA_HELPX
[Raw transfer]




AZ1_C_3(1TUF)
DCDA_METJA
[Raw transfer]




LYS_A_3(1HKV)
DCDA_MYCTU
[Raw transfer]




LYS_A_3(1HKV)
DCDA_MYCTU
[Raw transfer]




LYS_B_4(1HKV)
DCDA_MYCTU
[Raw transfer]




MES_A_6(1KNW)
DCDA_ECOLI
[Raw transfer]




MES_A_6(1KNW)
DCDA_ECOLI
[Raw transfer]




N2P_A_2(5GJP)
DCLO_SELRU
[Raw transfer]




25 PsiBlast_CBE 88.0255% -92 - C1 -4XG1 - ? -
1 PsiBlast_PDB 87.8162% -80 - C1 -3N2B - DCDA_VIBCH -
47 HHSearch 86.6355% -82 - C1 -4XG1 - ? -
52 HHSearch 86.5249% -96 - C1 -3VAB - ? -
24 PsiBlast_CBE 85.8155% -89 - C1 -4XG1 - ? -
2 PsiBlast_PDB 82.1349% -65 - C1 -3VAB - ? -
50 HHSearch 81.5447% -82 - C1 -2P3E - DCDA_AQUAE -
26 PsiBlast_CBE 81.2249% -64 - C1 -3VAB - ? -
42 HHSearch 80.3163% -16 - C1 -3N2B - DCDA_VIBCH -
5 PsiBlast_PDB 80.1042% -99 - C1 -3C5Q 4.7 DCDA_HELPX
49 HHSearch 80.0841%-100 - C1 -3C5Q 4.7 DCDA_HELPX
48 HHSearch 79.7942%-100 - C1 -2QGH 8.2 DCDA_HELPX
4 PsiBlast_PDB 79.4342% -99 - C1 -2QGH 8.2 DCDA_HELPX
3 PsiBlast_PDB 79.1147% -80 - C1 -2P3E - DCDA_AQUAE -
41 HHSearch 78.8363% -7 - C1 -3N2B - DCDA_VIBCH -
51 HHSearch 76.1538%-106 - C1 -2YXX 3.1 DCDA_THEMA
8 PsiBlast_PDB 75.4237%-108 - C1 -2YXX 3.1 DCDA_THEMA
45 HHSearch 70.1831% -34 - C1 -2O0T - DCDA_MYCTU -
43 HHSearch 69.0739% 18 - C1 -1TWI - DCDA_METJA -
44 HHSearch 68.8931% -35 - C1 -1HKV 2.0 DCDA_MYCTU
30 PsiBlast_CBE 68.8331% -35 - C1 -1HKV 2.2 DCDA_MYCTU
9 PsiBlast_PDB 68.3731% -35 - C1 -1HKV 2.0 DCDA_MYCTU
40 HHSearch 67.5538% 19 * C1 *1TUF 2.9 DCDA_METJA
7 PsiBlast_PDB 66.1739% 26 - C1 -1TUF 3.2 DCDA_METJA
53 HHSearch 63.4631% -20 - C1 -1KNW 2.1 DCDA_ECOLI
13 PsiBlast_PDB 63.2431% -6 - C1 -1KO0 3.8 DCDA_ECOLI
12 PsiBlast_PDB 62.4231% -3 - C1 -1KNW 2.1 DCDA_ECOLI