@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VT39: (2017-12-11 )
MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFLENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIETVEDEEELLEGEVDTTETDSEEAVSNNEDTSEE

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(5CDP)
GYRA_STAAN
[Raw transfer]
-
SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



TR6_H_11(4Z2E)
?
[Raw transfer]



NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_G_6(5CDP)
GYRA_STAAN
[Raw transfer]
-
NACID_P_16(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_G_6(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_O_8(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
TR6_F_9(4Z2E)
?
[Raw transfer]



NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_N_14(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_N_8(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_N_8(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_I_6(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
21 PsiBlast_CBE 78.7769%-104 - C4 -2Y3P 4.3 GYRA_ECOLI (first)
2 PsiBlast_PDB 78.3569%-103 - C4 -4TMA - ? -
1 PsiBlast_PDB 76.0869%-101 - C4 -2Y3P - GYRA_ECOLI (first) -
4 PsiBlast_PDB 75.2568%-107 - C4 -1AB4 - GYRA_ECOLI -
98 HHSearch 70.5959% -37 - C4 -5IWI 6.7 GYRA_STAAN (first)
97 HHSearch 70.3854% -94 - C4 -4Z2C - ? -
99 HHSearch 69.6359% -36 * C4 *5CDM 3.2 GYRA_STAAN
43 PsiBlast_CBE 69.4350%-102 - C4 -4Z2C - ? -
15 PsiBlast_PDB 69.2950% -95 - C4 -4Z2C - ? -
6 PsiBlast_PDB 69.2754% -35 - C4 -5CDP 4.1 GYRA_STAAN
8 PsiBlast_PDB 69.2254% -35 - C4 -5IWI 6.7 GYRA_STAAN (first)
26 PsiBlast_CBE 69.1654% -36 - C4 -5CDP 5.0 GYRA_STAAN
41 PsiBlast_CBE 69.1554% -41 - C4 -5CDN 4.1 GYRA_STAAN (first)
13 PsiBlast_PDB 69.1454% -39 - C4 -5CDN 4.3 GYRA_STAAN (first)
16 PsiBlast_PDB 69.1050% -96 - C4 -4Z2D - ? -
28 PsiBlast_CBE 68.9854% -34 - C4 -5IWI 4.7 GYRA_STAAN
25 PsiBlast_CBE 68.8554% -38 - C4 -5CDR 5.4 GYRA_STAAN
12 PsiBlast_PDB 68.7654% -44 - C4 -5CDO 4.2 GYRA_STAAN
17 PsiBlast_PDB 68.7150% -95 - C4 -4Z2E 2.6 ?
9 PsiBlast_PDB 68.6554% -35 - C4 -5IWM 4.7 GYRA_STAAN (first)
27 PsiBlast_CBE 68.5354% -36 - C4 -5IWM 6.4 GYRA_STAAN
7 PsiBlast_PDB 68.4354% -37 - C4 -5CDR 5.1 GYRA_STAAN
14 PsiBlast_PDB 68.4254% -39 - C4 -5CDQ 4.9 GYRA_STAAN
38 PsiBlast_CBE 68.2054% -40 - C4 -5CDQ 3.2 GYRA_STAAN
104 HHSearch 68.1759% -39 - C4 -2XCR 5.3 GYRA_STAAN (first)
11 PsiBlast_PDB 67.9554% -35 - C4 -5CDM 3.2 GYRA_STAAN
42 PsiBlast_CBE 67.3250% -99 - C4 -4Z2E 2.6 ?
30 PsiBlast_CBE 67.1854% -34 - C4 -2XCR 3.0 GYRA_STAAN (first)
10 PsiBlast_PDB 66.9654% -32 - C4 -2XCR 3.4 GYRA_STAAN (first)
31 PsiBlast_CBE 66.9454% -36 - C4 -2XCR 5.3 GYRA_STAAN (first)
29 PsiBlast_CBE 66.4554% -36 - C4 -2XCR 4.1 GYRA_STAAN (first)
73 PsiBlast_CBE 65.8440% -92 - C4 -3RAE 4.5 PARC_STRPN
75 PsiBlast_CBE 65.3540% -86 - C4 -3RAD 3.4 PARC_STRPN
74 PsiBlast_CBE 65.0240% -91 - C4 -3RAD 4.2 PARC_STRPN
102 HHSearch 61.8848% -5 - C4 -3ILW 2.8 GYRA_MYCTU
18 PsiBlast_PDB 61.8245% -6 - C4 -3IFZ 3.1 GYRA_MYCTU
62 PsiBlast_CBE 60.8045% -2 - C4 -3ILW 2.4 GYRA_MYCTU
44 PsiBlast_CBE 60.8045% -1 - C4 -3IFZ 3.2 GYRA_MYCTU
63 PsiBlast_CBE 60.5145% -2 - C4 -3ILW 2.8 GYRA_MYCTU
84 PsiBlast_CBE 57.0040% -92 - C4 -3FOF 3.1 PARC_STRPN
39 PsiBlast_CBE 54.2554% 5 - C4 -5CDN 3.0 GYRA_STAAN
32 PsiBlast_CBE 54.1854% 2 - C4 -5CDO 2.1 GYRA_STAAN
37 PsiBlast_CBE 54.0254% 2 - C4 -5CDQ 3.0 GYRA_STAAN
40 PsiBlast_CBE 53.6854% 3 - C4 -5CDN 2.3 GYRA_STAAN
34 PsiBlast_CBE 53.6554% 7 - C4 -5CDO 5.9 GYRA_STAAN
35 PsiBlast_CBE 53.4154% 8 - C4 -5CDM 0.8 GYRA_STAAN
33 PsiBlast_CBE 53.3754% 8 - C4 -5CDO 3.5 GYRA_STAAN
36 PsiBlast_CBE 52.9554% 4 - C4 -5CDQ 2.2 GYRA_STAAN