@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VT97: (2017-12-12 )
MYTFDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIKNPFLAIEREQMILSNFSLDEQKRIRFVHVVDVYNDEKWVKQVKSLINGVIEPNSKVGLIGHFKDESSYYLRLFPEWVMVELDSLKDSISATPMREAYYQGKIKTDAFPKGTIQFLEEFQNTPLYLQLQQKFLQADHSNIEETVSSHKE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_9(2QJO)
NADM_SYNY3
[Raw transfer]




NAD_B_12(2QJO)
NADM_SYNY3
[Raw transfer]




POP_C_16(2QJO)
NADM_SYNY3
[Raw transfer]




POP_C_16(2QJO)
NADM_SYNY3
[Raw transfer]




POP_B_13(2QJO)
NADM_SYNY3
[Raw transfer]




POP_B_13(2QJO)
NADM_SYNY3
[Raw transfer]




POP_A_10(2QJO)
NADM_SYNY3
[Raw transfer]




22 PsiBlast_CBE 90.4437% -95 - C5 -2QJO 11.4 NADM_SYNY3
1 PsiBlast_PDB 89.9037% -93 - C5 -2QJO 10.9 NADM_SYNY3
34 Fugue 88.5434% -57 - C5 -2R5W - ? -
21 PsiBlast_CBE 88.0537% -88 - C5 -2QJO 3.8 NADM_SYNY3
49 HHSearch 87.6035% -91 - C5 -2QJO 3.1 NADM_SYNY3
48 HHSearch 87.1735% -85 - C5 -2QJO 3.8 NADM_SYNY3
45 HHSearch 86.6037% -59 - C5 -2R5W - ? -
2 PsiBlast_PDB 85.4738% -56 - C5 -2QJT - ? -
3 PsiBlast_PDB 84.9338% -57 - C5 -2R5W - ? -
46 HHSearch 83.7037% -54 - C5 -2QJT - ? -
50 HHSearch 69.1427%-111 - C5 -1F9A - NADM_METJA -
35 Fugue 64.8826% -76 - C5 -1F9A - NADM_METJA -
47 HHSearch 64.5927% -40 - C5 -4YP6 - NADM_METTH -
44 HHSearch 62.8726% -31 - C5 -1M8K - NADM_METTH -
55 HHSearch 59.1519%-100 - C5 -5H7X - COAD_ACIBS -
31 PsiBlast_CBE 58.6335%-173 - C5 -1F9A - NADM_METJA -
29 PsiBlast_CBE 58.5835%-190 - C5 -1F9A - NADM_METJA -
60 HHSearch 58.5021%-104 - C5 -1VLH - COAD_THEMA -
30 PsiBlast_CBE 58.1035%-187 - C5 -1F9A - NADM_METJA -
58 HHSearch 57.9919%-137 - C5 -4F3R - COAD_COXBU -