@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTB3: (2017-12-12 )
MNKRYSFLFSSLLAVGLLQGCGDDSSSDQPKDDSNTTPPNLIVDNDPTSCSKLAQDGSSVVVGSNQNGDPAAPEGASGYRLGNTVKYADKYMVVANTPLAVKAGCDVLKAGGSAVDAAVAVQAVLGLVEPQSSTIAGSGFMMYYDAKTKQVTAYDGRETAPAAANEFYLIRQNIYDPNSPPPVPNARRSGRSIGVPGVMRLLEQAQKEHGKLEWKQLFGEAIGLADNGFRIPGRLADAIASNASNLALDADAMRIYFHSDGSPRKVGETMTNKEYADTLKAIVSEGANALHNGRIAQAIVSEAGRTEGDDPAKTPITPSLMTLQDLSNYQVKKRDPICTTYRDRYYVCTMPPPSSGGIAVAQTLGILENFDMSLYPPKNPENEGGVLDVMGVHLVSEAERLAYADRDKYVADTDFVRLLAQGIPSFIDKNYLKQRAALINPNQSMGVAPAGNFNTAAGVDTTVEHGTTQFTIVDAYGNVVSMTSTVESSMGSFHMVDGFLLSNQLTDFSANPYDSTGAPVANRVEGGKRPRSTMAPTLVFKGTTPDEFYMATGSPGGGTIIQYVVKTLVGALDWNLNAQQATSLVNFGATNSKNTNIDSSNVQLSLVDLIEGLKAKGHGISNTAQTSGISTIMKVNINNQSKYAGGVDPRREGIVLGNGAL

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAG_B_13(4GG2)
?
[Raw transfer]



EDO_C_25(5BPK)
?
[Raw transfer]



AZS_D_6(2Z8J)
?
[Raw transfer]



AZS_B_5(2Z8I)
?
[Raw transfer]



AVN_D_6(2Z8K)
GGT_ECOLI
[Raw transfer]



AZS_B_5(2Z8J)
GGT_ECOLI
[Raw transfer]



AVN_D_6(3FNM)
?
[Raw transfer]



GLU_B_4(4OTU)
?
[Raw transfer]



GLU_B_5(2QM6)
?
[Raw transfer]



GLU_D_6(3A75)
?
[Raw transfer]



AVN_B_3(3WHS)
GGT_BACSU
[Raw transfer]



4UD_C_15(5BPK)
?
[Raw transfer]



AZS_D_6(2Z8I)
?
[Raw transfer]



6FY_D_7(5B5T)
?
[Raw transfer]



AVN_B_5(3FNM)
?
[Raw transfer]



AVN_B_5(2Z8K)
GGT_ECOLI
[Raw transfer]



GLU_B_5(2DBW)
?
[Raw transfer]



6FY_B_5(5B5T)
?
[Raw transfer]



GLU_B_7(2DBX)
GGT_ECOLI
[Raw transfer]



GLU_D_6(2QM6)
?
[Raw transfer]



GLU_B_4(4OTU)
?
[Raw transfer]



EDO_C_20(5BPK)
?
[Raw transfer]
73 HHSearch 89.7735% -32 * C2 *4Y23 - ? -
1 PsiBlast_PDB 84.5635% -46 - C2 -4Y23 - ? -
22 PsiBlast_CBE 71.4033% -83 - C2 -5B5T 2.2 ?
79 HHSearch 71.3439% -76 - C2 -3WHR - ? -
12 PsiBlast_PDB 70.9433% -82 - C2 -5B5T 2.3 ?
78 HHSearch 70.5239% -72 - C2 -2V36 - GGT_BACSU -
10 PsiBlast_PDB 70.4933% -82 - C2 -2Z8J 2.4 GGT_ECOLI
25 PsiBlast_CBE 70.3833% -80 - C2 -2Z8I 2.7 ?
75 HHSearch 70.2626% -10 - C- -2NLZ - ? -
23 PsiBlast_CBE 70.1833% -80 - C2 -2Z8K 2.8 GGT_ECOLI
11 PsiBlast_PDB 70.1033% -83 - C2 -2Z8K 2.8 GGT_ECOLI
74 HHSearch 70.0326% -9 - C- -2NLZ - ? -
24 PsiBlast_CBE 69.8333% -79 - C2 -2Z8J 2.7 ?
6 PsiBlast_PDB 69.7136% -71 - C2 -3WHR - ? -
4 PsiBlast_PDB 69.6136% -70 - C2 -3A75 - ? -
9 PsiBlast_PDB 69.3533% -81 - C2 -2Z8I 2.7 ?
21 PsiBlast_CBE 68.9236% -68 - C2 -3A75 2.8 ?
8 PsiBlast_PDB 68.7136% -69 - C2 -2V36 - GGT_BACSU -
7 PsiBlast_PDB 68.6736% -72 - C2 -3WHS 2.9 GGT_BACSU
20 PsiBlast_PDB 68.1533% -79 - C2 -2DBX 2.7 GGT_ECOLI
19 PsiBlast_PDB 67.6133% -79 - C2 -2DBW 2.7 ?
3 PsiBlast_PDB 66.5534% -63 - C2 -4OTU 2.6 ?
16 PsiBlast_PDB 60.7831% -2 - C2 -5BPK 2.8 ?
13 PsiBlast_PDB 60.2331% -4 - C2 -2QM6 2.7 ?
28 PsiBlast_CBE 59.5031% -4 - C2 -2QM6 2.7 ?
15 PsiBlast_PDB 59.0331% -4 - C2 -3FNM 2.8 ?
26 PsiBlast_CBE 59.0131% -4 - C2 -3FNM 2.8 ?
30 PsiBlast_CBE 52.6231% 11 - C2 -4GG2 Error ?
33 PsiBlast_CBE 29.6831% 48 - C2 -5BPK 3.1 ?
40 PsiBlast_CBE 18.5643% 31 - C2 -4OTU 4.0 ?