@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTE3: (2017-12-13 )
MPQDQHLGVDKAKILIEALPYIQRFSGKTLVVKYGGNAMTDPELESSFARDIVLLKTVGLNPIVVHGGGPQVDSFLKQLGRESDRIDGMRVTDEATMEVVEMVLGGSVNKSIVNLINKHGGRAIGLTGQDGNLLRARKLLMEKQEEDGSIKHIDLGMVGEVTGVKTDVLEMFTQSDFIPVIAPLGVDEKGNTYNINADLVAGKVAEALGAEKLILLTNISGVLDENKNLLTGLTTQEVDRLIETGVIYGGMIPKVGCALDAVKGGVVSAHIVDGRVPHATLLEIFTDHGVGTLISNRTQTTH

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

X2W_B_10(4USJ)
NAGK_ARATH
[Raw transfer]



ADP_A_6(4USJ)
NAGK_ARATH
[Raw transfer]



ADP_B_12(2RD5)
NAGK_ARATH
[Raw transfer]



ANP_A_3(1GS5)
ARGB_ECOLI
[Raw transfer]



ADP_A_2(3L86)
ARGB_STRMU
[Raw transfer]



ADP_A_2(3L86)
ARGB_STRMU
[Raw transfer]



ADP_B_12(2RD5)
NAGK_ARATH
[Raw transfer]



X2W_A_3(2X2W)
ARGB_ECOLI
[Raw transfer]



NLG_A_7(2JJ4)
ARGB_SYNE7
[Raw transfer]



NLG_B_8(2JJ4)
ARGB_SYNE7
[Raw transfer]



ADP_A_9(2RD5)
NAGK_ARATH
[Raw transfer]



NLG_C_19(2BTY)
ARGB_THEMA
[Raw transfer]



GOL_A_9(3ZZF)
ARG56_YEAST
[Raw transfer]



DTU_A_3(2WXB)
ARGB_ECOLI
[Raw transfer]



NLG_B_17(2BTY)
ARGB_THEMA
[Raw transfer]



NLG_B_17(2BTY)
ARGB_THEMA
[Raw transfer]



NLG_A_15(2BTY)
ARGB_THEMA
[Raw transfer]



DTU_B_5(2WXB)
ARGB_ECOLI
[Raw transfer]
38 PsiBlast_CBE 91.4949%-128 - C1 -2BTY 2.5 ARGB_THEMA
67 HHSearch 90.5151%-125 - C1 -2BTY 2.2 ARGB_THEMA
65 HHSearch 90.1465% -83 - C1 -2BUF - ARGB_PSEAE -
1 PsiBlast_PDB 89.8766% -78 - C1 -2BUF - ARGB_PSEAE -
39 PsiBlast_CBE 89.8449%-126 - C1 -2BTY 2.2 ARGB_THEMA
21 PsiBlast_CBE 88.7366% -75 - C1 -2BUF - ARGB_PSEAE -
4 PsiBlast_PDB 88.1449%-126 - C1 -2BTY 2.1 ARGB_THEMA
68 HHSearch 86.3951% -85 - C1 -2RD5 6.7 NAGK_ARATH
5 PsiBlast_PDB 85.7251%-100 - C1 -2RD5 5.1 NAGK_ARATH
40 PsiBlast_CBE 85.6551% -98 - C1 -2RD5 6.5 NAGK_ARATH
70 HHSearch 85.5452% -80 - C1 -2V5H - ARGB_SYNE7 -
41 PsiBlast_CBE 85.1151%-106 - C1 -4USJ 5.4 NAGK_ARATH
6 PsiBlast_PDB 84.0051% -96 - C1 -4USJ 6.5 NAGK_ARATH
33 PsiBlast_CBE 83.8650% -82 - C1 -2V5H - ARGB_SYNE7 -
69 HHSearch 83.6852% -79 * C1 *2V5H - ARGB_SYNE7 -
32 PsiBlast_CBE 83.6850% -82 - C1 -2V5H - ARGB_SYNE7 -
34 PsiBlast_CBE 83.5150% -82 - C1 -2V5H - ARGB_SYNE7 -
37 PsiBlast_CBE 83.1050% -89 - C1 -2JJ4 3.3 ARGB_SYNE7
36 PsiBlast_CBE 82.8350% -82 - C1 -2V5H - ARGB_SYNE7 -
2 PsiBlast_PDB 82.5150% -88 - C1 -2JJ4 3.2 ARGB_SYNE7
84 HHSearch 69.5631%-132 - C1 -3L86 5.8 ARGB_STRMU
16 PsiBlast_PDB 48.4634% -2 - C1 -3L86 5.8 ARGB_STRMU