@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTG3: (2017-12-13 )
MARQTPITRYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWSGMGNQFPQYRINVIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFRVVEQMKTRLGANPVPIVVPIGAEDTFTGVVDLIEMKAIIWDEASQGMKFEYGEIPADLVDTAQEWRTNMVEAAAEASEELMDKYLEEGDLSKEDIIAGLRARTLASEIQVMLCGSAFKNKGVQRMLDAVIEFLPSPTEVKAIEGILDDKDETKASREASDEAPFSALAFKIMNDKFVGNLTFVRVYSGVLKQGDAVYNPVKSKRERIGRIVQMHANERQDIDEIRAGDIAACVGLKDVTTGDTLCDEKNIITLERMEFPDPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREFGVEANIGKPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLDVEAAGKEYEFAEEVVGGVVPKEFFGAVDKGIQERMKNGVLAGYPVVGVKAVLFDGSYHDVDSDELSFKMAGSYAFRDGFMKADPVLLEPIMKVEVETPEDYMGDIMGDLNRRRGMVQGMDDLPGGTKAIKAEVPLAEMFGYATQMRSMSQGRATYSMEFAKYAETPRNVAEGIIAKFQAGGKKGDDE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]




GDP_A_2(2BM0)
?
[Raw transfer]




GDP_A_2(2BM0)
?
[Raw transfer]




GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]




GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]




GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]




G4P_A_5(4ZCM)
TYPA_ECOLI
[Raw transfer]




G4P_B_9(4ZCM)
TYPA_ECOLI
[Raw transfer]




GCP_A_2(5A9W)
TYPA_ECOLI
[Raw transfer]




GDP_A_2(5A9X)
TYPA_ECOLI
[Raw transfer]




GDP_B_2(1DAR)
?
[Raw transfer]




77 HHSearch 81.5858% -80 - C1 -2XEX - EFG_STAAU -
2 PsiBlast_PDB 80.4858% -83 - C1 -2XEX - EFG_STAAU -
76 HHSearch 78.2271% -34 - C1 -3J0E - EFG_ECOLI -
1 PsiBlast_PDB 77.8971% -34 - C1 -3J0E - EFG_ECOLI -
6 PsiBlast_PDB 74.4456% -39 - C1 -2J7K 7.3 EFG_THETH
10 PsiBlast_PDB 74.4256% -41 - C1 -2BM0 6.6 ?
78 HHSearch 73.9657% -39 - C1 -2BM0 6.6 ?
4 PsiBlast_PDB 73.8256% - - C1 -1JQM - EFG_THETH -
5 PsiBlast_PDB 73.7856% -35 - C1 -2OM7 - ? -
8 PsiBlast_PDB 73.7756% -38 - C1 -4M1K 6.4 ?
9 PsiBlast_PDB 73.4556% -41 - C1 -2BM1 6.6 EFG_THETH
12 PsiBlast_PDB 73.3356% -38 - C1 -1FNM 7.3 EFG_THETH
67 Fugue 73.3255% -81 - C1 -1ELO - ? -
65 Fugue 73.2356% -36 - C1 -4M1K 6.4 ?
11 PsiBlast_PDB 73.1656% -35 - C1 -4MYU 5.8 EFG_THETH
7 PsiBlast_PDB 72.1056% -36 - C1 -4MYT 6.0 EFG_THETH
14 PsiBlast_PDB 70.7756% -28 - C1 -3IZP - ? -
13 PsiBlast_PDB 70.1856% - - C1 -1PN6 - EFG_THETH -
82 HHSearch 69.9556% - - C1 -1ZN0 - EFG_THET8 -
3 PsiBlast_PDB 69.2056% -47 - C1 -2EFG 7.1 EFG_THET8
68 Fugue 36.0455% 22 - C1 -1DAR Error ?
28 PsiBlast_CBE 25.6439% -90 - C1 -5A9X 3.0 TYPA_ECOLI