@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTM6: (2017-12-14 )
MSMHSDQINPDSNENQDPNNLIDQFFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDLVLDKLKNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKTGRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKVKGGWSDDERALKSLGYSDI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]




GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




3 PsiBlast_PDB 89.7356%-136 - C2 -3IEU 8.1 ERA_ECOLI
21 PsiBlast_CBE 89.4456%-136 - C2 -3IEU 7.9 ERA_ECOLI
57 HHSearch 88.3557%-130 - C2 -1EGA - ERA_ECOLI -
1 PsiBlast_PDB 87.8356%-140 - C2 -1EGA - ERA_ECOLI -
58 HHSearch 81.0757% - - C2 -1X18 - ERA_THET8 -
2 PsiBlast_PDB 80.7856% - - C2 -1X1L - ERA_THET8 -
4 PsiBlast_PDB 80.1655% - - C2 -1X18 - ERA_THET8 -
6 PsiBlast_PDB 73.1441% 20 - C2 -3R9W 10.5 ERA_AQUAE
81 Fugue 72.8451%-157 - C2 -1EGA - ERA_ECOLI -
59 HHSearch 72.8341% -11 - C2 -1WF3 10.7 ERA_THET8
5 PsiBlast_PDB 72.7341% 22 - C2 -3IEV 10.5 ERA_AQUAE
60 HHSearch 72.3542% 22 - C2 -3IEV 10.5 ERA_AQUAE
7 PsiBlast_PDB 71.7541% 25 - C2 -3R9X 10.1 ERA_AQUAE
61 HHSearch 71.7043% 24 - C2 -3R9X 10.1 ERA_AQUAE
8 PsiBlast_PDB 71.2440% -19 - C2 -1WF3 10.6 ERA_THET8
20 PsiBlast_PDB 52.4327%-105 - C2 -4DCV - DER_BACSU -
18 PsiBlast_PDB 51.0527% -98 - C2 -4DCS - DER_BACSU -
19 PsiBlast_PDB 50.9727%-106 - C2 -4DCU - DER_BACSU -
82 Fugue 49.3464%-136 - C2 -1EGA - ERA_ECOLI -
16 PsiBlast_PDB 48.7329% -53 - C2 -1XZP - MNME_THEMA -