@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VU09: (2017-12-16 )
MFDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALGQEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLSAKPPVVVLLAGLQGAGKTTTAAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDPSEKPIDIVNRAIEQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVKPTETLFVVDAMTGQDAANTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPDRVAQRILGMGDVLSLVEEVERKIDKEKAEKMAKKLQKGGSFNFEDMLMQFEQMKKMGGMMGFLDKLPGMSSAGIQQAIEQANPEKQVKKMEAIIQSMTIKERRNPDLMNPSRKKRIAAGCGMDVAEVNKLIKQQAQMAKMMKKFANPSGMSKMMRSLGNMQKQFGGGGGMGPLFGNNDQKK

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_B_6(5L3V)
SRP54_SULSO
[Raw transfer]




GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]




GDP_A_3(5L3V)
SRP54_SULSO
[Raw transfer]




GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]




GDP_A_2(5L3W)
FTSY_SULAC
[Raw transfer]




GDP_A_2(5L3W)
FTSY_SULAC
[Raw transfer]




GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]




GDP_D_17(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]




GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]




GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]




GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]




GNP_B_14(5L3Q)
SRP54_HUMAN
[Raw transfer]




GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GNP_D_25(5L3Q)
SRP54_HUMAN
[Raw transfer]




GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]




GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




GCP_B_7(5L3R)
SR54C_ARATH
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




OXY_A_3(1LS1)
SRP54_THEAQ
[Raw transfer]




GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]




FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]




GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]




GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]




EDO_A_6(2J7P)
SRP54_THEAQ
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]




EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]




AMP_A_9(5L3Q)
SRP54_HUMAN
[Raw transfer]




ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]




GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]




1 PsiBlast_PDB 90.3866% -96 - C5 -2XXA - SRP54_ECOLI -
21 PsiBlast_CBE 90.0266%-104 - C5 -2XXA - SRP54_ECOLI -
107 HHSearch 85.9973%-107 - C5 -4C7O 4.0 SRP54_ECOLI
22 PsiBlast_CBE 85.9973%-107 - C5 -4C7O 4.0 SRP54_ECOLI
2 PsiBlast_PDB 83.5573%-104 - C5 -4C7O 3.0 SRP54_ECOLI
119 HHSearch 74.5951%-118 - C5 -5L3R 2.8 SR54C_ARATH
25 PsiBlast_CBE 74.0550%-119 - C5 -5L3R 2.8 SR54C_ARATH
5 PsiBlast_PDB 73.1650%-120 - C5 -5L3R 2.9 SR54C_ARATH
104 HHSearch 72.4535% -76 * C2 *3DM5 - SRP54_PYRFU -
103 HHSearch 71.8535% -82 - C2 -3DM5 - SRP54_PYRFU -
44 PsiBlast_CBE 70.2232%-121 - C5 -5L3Q 3.0 SRP54_HUMAN
45 PsiBlast_CBE 70.1332%-118 - C5 -5L3Q 3.8 SRP54_HUMAN
4 PsiBlast_PDB 68.6740% - - C5 -2IY3 - SRP54_SULSO (first) -
6 PsiBlast_PDB 67.8336% -30 - C2 -3DM5 - SRP54_PYRFU -
26 PsiBlast_CBE 67.2936% -32 - C2 -3DM5 - SRP54_PYRFU -
89 Fugue 66.0429% -42 - C2 -2J37 - SRP54_CANLF -
9 PsiBlast_PDB 65.5738% -14 - C5 -3NDB - SRP54_METJA -
50 PsiBlast_CBE 62.4836% -68 - C5 -5L3S - SRP54_SULSO -
46 PsiBlast_CBE 62.2937% -59 - C5 -5L3V 8.5 SRP54_SULSO
47 PsiBlast_CBE 62.2337% -51 - C5 -5L3V 7.4 SRP54_SULSO
15 PsiBlast_PDB 59.3246% 8 - C5 -1JPJ 7.5 SRP54_THEAQ
18 PsiBlast_PDB 59.1645% -1 - C5 -1LS1 3.1 SRP54_THEAQ
31 PsiBlast_CBE 59.0346% 18 - C5 -1O87 7.1 SRP54_THEAQ
63 PsiBlast_CBE 58.7437% -50 - C5 -4C7O 7.2 FTSY_ECOLI
16 PsiBlast_PDB 57.8246% 19 - C5 -1JPN 7.3 SRP54_THEAQ
36 PsiBlast_CBE 57.7545% 19 - C5 -2J7P 9.4 SRP54_THEAQ
32 PsiBlast_CBE 57.7546% 15 - C5 -1JPN 6.5 SRP54_THEAQ
40 PsiBlast_CBE 57.4945% 18 - C5 -1OKK 2.9 SRP54_THEAQ
33 PsiBlast_CBE 57.4945% 11 - C5 -3NG1 3.4 SRP54_THEAQ
34 PsiBlast_CBE 57.4845% 11 - C5 -3NG1 3.4 SRP54_THEAQ
64 PsiBlast_CBE 57.3737% -43 - C5 -4C7O 7.1 FTSY_ECOLI
41 PsiBlast_CBE 57.3145% 11 - C5 -1NG1 7.5 SRP54_THEAQ
11 PsiBlast_PDB 57.1546% 14 - C5 -1O87 7.3 SRP54_THEAQ
42 PsiBlast_CBE 56.2845% 22 - C5 -2NG1 6.2 SRP54_THEAQ
35 PsiBlast_CBE 56.0445% 21 - C5 -2J7P 9.5 SRP54_THEAQ
66 PsiBlast_CBE 54.1840% -58 - C5 -1VMA 3.9 ?
7 PsiBlast_PDB 53.1546% 29 - C5 -1RJ9 9.4 SRP54_THEAQ
56 PsiBlast_CBE 52.5533% 21 - C5 -5L3W 6.9 FTSY_SULAC
109 HHSearch 52.1335% 30 - C5 -3E70 6.8 ?
120 HHSearch 51.0831% 18 - C5 -5L3W 6.9 FTSY_SULAC
85 PsiBlast_CBE 47.8637% -32 - C5 -1RJ9 2.9 FTSY_THEAQ
80 PsiBlast_CBE 47.6138% -28 - C5 -2J7P 2.9 FTSY_THEAQ
79 PsiBlast_CBE 47.5038% -28 - C5 -2J7P 2.9 FTSY_THEAQ
72 PsiBlast_CBE 47.4638% -29 - C5 -1OKK 7.5 FTSY_THEAQ
81 PsiBlast_CBE 46.0138% -37 - C5 -2IYL 5.2 FTSY_THEAQ
52 PsiBlast_CBE 46.0035% 21 - C5 -3E70 6.8 ?
74 PsiBlast_CBE 45.5038% -31 - C5 -2Q9C 4.8 FTSY_THEAQ
76 PsiBlast_CBE 44.4138% -25 - C5 -2Q9B 4.4 FTSY_THEAQ