@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VU29: (2017-12-16 )
MRKILVTNALPYANGPIHMGHLLGYIQADIWVRAMRAMGHDVTYVCADDAHGTAIMLRAEANGISPEEQIANVQKEHIRDFDGFGVHFDHYDSTHSDVNKARSTDIYIKNREAGNIAVRPVTQLFDPEKGMFLSDRFIKGTCPKCKSEDQYGDSCEVCGTTYNATELLNPRSTLSGATPVEKSSDHYFFKLPNFAEYLQKWTRDEGRLPLSIANKLDEWFEAGLADWDISRDAPYFGFEIPDAPNKYFYVWVDAPIGYMSSFENYIKTKRPDLNFDDFWKKDSQNEVYHFIGKDIVYFHALFWPAMLEGANYRTPTGLFVNGFLTVNGQKMSKSRGTFIKAETYLQHLNPEYLRYYFASKLSDKVEDSDLNLDDFVQKVNSDLVGKVVNIASRCAKFINSSFNNTLSSTCAESDLVQSFIDAGDSIAAAYEAREFSTAIREIMALADRANQYIDEKKPWALAKQEGQEQQVLDVCSVGINLFRQLAVYLAPVLSTLAQQVQDFLKLESFDFESRKQILVSHEIAQFQPLMQRVDPKAVAAMVDASKESLGAPAPQATKAAKKEKSAEKKVAPTSAVGEAEIIGIEDFLKVDLRVAQVVEAGTVEGSDKLLQLTLDVGEAEPRNVFSGIRSQYAPEDLKGKLVVMVANLAPRKMRFGISNGMVLAAGNGEGIFIISPDSGAKPGDKVS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MPJ_A_3(1PFU)
SYM_ECOLI
[Raw transfer]




NOT_A_3(3H9B)
SYM_ECOLI
[Raw transfer]




MPH_A_3(1P7P)
SYM_ECOLI
[Raw transfer]




MF3_A_3(1PFW)
SYM_ECOLI
[Raw transfer]




2FM_A_3(1PFV)
SYM_ECOLI
[Raw transfer]




ADN_B_2(1PG2)
SYM_ECOLI
[Raw transfer]




CIT_A_4(3H99)
SYM_ECOLI
[Raw transfer]




21 PsiBlast_CBE 91.3699%-104 - C1 -5URB - ? -
1 PsiBlast_PDB 90.8899%-104 - C1 -5URB - ? -
3 PsiBlast_PDB 82.0958%-104 - C1 -1PFU 2.9 SYM_ECOLI
9 PsiBlast_PDB 82.0858%-107 - C1 -1F4L - SYM_ECOLI -
12 PsiBlast_PDB 81.9057%-106 - C1 -3H97 - SYM_ECOLI -
10 PsiBlast_PDB 81.9058%-107 - C1 -3H9C - SYM_ECOLI -
14 PsiBlast_PDB 81.7257%-105 - C1 -3H9B 4.2 SYM_ECOLI
13 PsiBlast_PDB 81.6657%-104 - C1 -3H99 - SYM_ECOLI -
71 HHSearch 81.6398% -28 - C1 -5URB - ? -
6 PsiBlast_PDB 81.5558%-103 - C1 -1PFY - SYM_ECOLI -
2 PsiBlast_PDB 81.3558%-102 - C1 -1P7P 2.9 SYM_ECOLI
11 PsiBlast_PDB 81.2158%-101 - C1 -1QQT - SYM_ECOLI -
5 PsiBlast_PDB 81.0158%-102 - C1 -1PFW 3.8 SYM_ECOLI
4 PsiBlast_PDB 80.8758%-101 - C1 -1PFV 3.5 SYM_ECOLI
7 PsiBlast_PDB 77.2058%-117 - C1 -1PG0 - SYM_ECOLI -
8 PsiBlast_PDB 76.9758%-118 - C1 -1PG2 4.7 SYM_ECOLI
70 HHSearch 70.9957% -20 - C1 -3H9C - SYM_ECOLI -
69 HHSearch 69.8957% 1 - C1 -3H99 3.4 SYM_ECOLI
57 Fugue 58.1030% 15 - C1 -1RQG - SYM_PYRAB -
16 PsiBlast_PDB 56.8228% -4 - C1 -5GL7 - ? -