@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VU95: (2017-12-17 )
MSDFLSEHLIYRDDDFMVIHKPSDILSVPGKGDLHDSVLTRLVAIEPRTLLIHRLDRDTSGILVFGLSKRGQSAIARQFQDRQTSKIYEALVAGHLEGEGTVDIPVVYDPSRPPLHIVDASHNKPALTHWQAIEHFQIQGQPVTRVKLTPITGRSHQLRVHMQYLGHPIVGDTLYATPEQLLVPRLCLHAKQLSFNHPVTGESLTFNCPVPF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_4(2I82)
RLUA_ECOLI
[Raw transfer]

-

URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




ACY_E_5(1XPI)
RLUC_ECOLI
[Raw transfer]




GOL_A_7(5VBB)
RUSD1_HUMAN
[Raw transfer]




GOL_A_7(5VBB)
RUSD1_HUMAN
[Raw transfer]




ACY_G_7(1XPI)
RLUC_ECOLI
[Raw transfer]




NACID_E_1(2I82)
RLUA_ECOLI
[Raw transfer]

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1 PsiBlast_PDB 92.9644% -41 - C4 -2I82 12.1 RLUA_ECOLI
35 HHSearch 92.1145% -40 * C4 *2I82 - RLUA_ECOLI -
36 HHSearch 90.6845% -42 - C4 -2I82 9.7 RLUA_ECOLI
3 PsiBlast_PDB 83.3234% -19 - C4 -2IST - RLUD_ECOLI -
32 HHSearch 82.6137% -14 - C4 -1PRZ - RLUD_ECOLI -
34 HHSearch 81.4936% -19 - C4 -1V9F - RLUD_ECOLI -
4 PsiBlast_PDB 81.3834% -16 - C4 -1PRZ - RLUD_ECOLI -
22 Fugue 80.8635% -6 - C4 -2IST - RLUD_ECOLI -
2 PsiBlast_PDB 80.6234% -19 - C4 -1V9F - RLUD_ECOLI -
33 HHSearch 79.7034% -4 - C4 -1V9K - RLUC_ECOLI -
5 PsiBlast_PDB 78.8833% -16 - C4 -1QYU - RLUD_ECOLI -
37 HHSearch 78.1731% -46 - C4 -5VBB 3.4 RUSD1_HUMAN
8 PsiBlast_PDB 77.8532% -16 - C4 -5VBB 3.4 RUSD1_HUMAN
7 PsiBlast_PDB 77.6935% -3 - C4 -1V9K - RLUC_ECOLI -
6 PsiBlast_PDB 77.3835% -9 - C4 -1XPI 3.6 RLUC_ECOLI
21 PsiBlast_CBE 77.3535% -7 - C4 -1XPI 3.5 RLUC_ECOLI
38 HHSearch 74.5331% -42 - C4 -5UBA - RUSD4_HUMAN -
9 PsiBlast_PDB 70.0527% -41 - C4 -5UBA - RUSD4_HUMAN -
43 HHSearch 54.5017% -93 - C4 -2GML - RLUF_ECOLI -
39 HHSearch 52.4620% -18 - C4 -2OML - RLUE_ECOLI -