@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VUA9: (2017-12-17 )
MFIEIGELLNLRLKQMGIQHLFGVPGDFNLSYLEQVEADPQLEFIGNCNELNAAYAADGYARINGFSALATTYGVGDLSAINGIAGAYAENVPLIHISGIPPLHAVQKGTLIHHTLVDGNYDNIMNCMKEFTVAQTRLTPANAASEIDRVLRQCFLERRPVHIQLPGDITHVKIEVSERPLDLSYPAVEPELLQSVVSKLCDIIENAQSPALLIDNEASVFGVTSLLNDLSQKCSIPFAGMNTAKNIMDEGSPRYIGTYVGGASQPHVKNIIEQSDCLIGIGARFTDVGSAVFTHQIEIKNYIEIKSYGLNIFGQDFPGIEIGQLLVELNKKVAPRKSSIPLLEKQPQKVIEAPAQQKLSQDVLWNYISGFLKEDDVIIGEVGTSNSALSGIKLPATAKYIAQPLWGSIGYTLPALLGSLLAAPERRQILFIGDGSFQLTVQELSTIIRHGLKPIIFLLNNGGYTIERLIMGENAAYNDVQNWKYSEIPAVFNGKKGHTTYCG

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TPP_A_5(1PVD)
PDC1_YEAST
[Raw transfer]




TPP_B_6(1PVD)
PDC1_YEAST
[Raw transfer]




TDP_A_5(1PYD)
PDC1_YEAST
[Raw transfer]




TPP_A_3(1QPB)
PDC1_YEAST
[Raw transfer]




TPP_A_5(1PVD)
PDC1_YEAST
[Raw transfer]




TDP_B_6(1PYD)
PDC1_YEAST
[Raw transfer]




TPP_B_7(4COK)
?
[Raw transfer]




TPP_B_6(1QPB)
PDC1_YEAST
[Raw transfer]




PYM_B_8(1QPB)
PDC1_YEAST
[Raw transfer]




28 PsiBlast_CBE 88.2739% -83 - C7 -1OVM - DCIP_ENTCL -
29 PsiBlast_CBE 88.0739% -85 - C7 -1OVM - DCIP_ENTCL -
3 PsiBlast_PDB 87.7339% -85 - C7 -1OVM - DCIP_ENTCL -
27 PsiBlast_CBE 87.3439% -84 - C7 -1OVM - DCIP_ENTCL -
22 PsiBlast_CBE 84.8740% -25 - C7 -2VK4 - PDC1_KLULA -
24 PsiBlast_CBE 84.7740% -24 - C7 -2VJY - PDC1_KLULA -
7 PsiBlast_PDB 84.7738% -28 - C7 -2VK8 - PDC1_YEAST -
25 PsiBlast_CBE 84.5340% -26 - C7 -2VJY - PDC1_KLULA -
8 PsiBlast_PDB 84.5138% -27 - C7 -2VK1 - PDC1_YEAST -
30 PsiBlast_CBE 84.4539% -29 - C7 -1QPB 6.3 PDC1_YEAST
38 PsiBlast_CBE 84.4438% -27 - C7 -2VK8 - PDC1_YEAST -
31 PsiBlast_CBE 84.3438% -28 - C7 -2W93 - PDC1_YEAST -
26 PsiBlast_CBE 84.3140% -25 - C7 -2VJY - PDC1_KLULA -
33 PsiBlast_CBE 84.2238% -28 - C7 -2W93 - PDC1_YEAST -
36 PsiBlast_CBE 84.2138% -27 - C7 -2VK8 - PDC1_YEAST -
40 PsiBlast_CBE 84.2038% -28 - C7 -2VK1 - PDC1_YEAST -
1 PsiBlast_PDB 84.0740% -24 - C7 -2VJY - PDC1_KLULA -
32 PsiBlast_CBE 84.0138% -26 - C7 -2W93 - PDC1_YEAST -
37 PsiBlast_CBE 83.9738% -29 - C7 -2VK8 - PDC1_YEAST -
39 PsiBlast_CBE 83.9638% -29 - C7 -2VK1 - PDC1_YEAST -
4 PsiBlast_PDB 83.8739% -26 - C7 -1QPB 8.2 PDC1_YEAST
34 PsiBlast_CBE 81.9438% -31 - C7 -1PVD 7.4 PDC1_YEAST
35 PsiBlast_CBE 81.5638% -27 - C7 -1PYD 7.3 PDC1_YEAST
5 PsiBlast_PDB 81.2538% -28 - C7 -1PVD 7.3 PDC1_YEAST
6 PsiBlast_PDB 80.9738% -26 - C7 -1PYD 7.2 PDC1_YEAST
93 Fugue 80.8539% -19 * C7 *1PVD 7.3 PDC1_YEAST
68 PsiBlast_CBE 79.4532% -42 - C7 -4COK 8.1 ?