@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VUD4: (2017-12-18 )
MNALTALSPLDGRYASKCDALRPFLSEFGLIHARVTVEVRWLQALSNRPEIVEVAPFSAETNAALDAIVSNFSEEDANRIKEIERTTNHDVKAVEYFLKEKIAGIAELQNAGEFIHFACTSEDINNLSHALMLKNGREVLVSSMKQILNAISALATTHAEQPMLSRTHGQTASPTTLGKEMANVAYRLARQIKQFENVELLGKINGAVGNYNAHLSAYPNVDWPAHSQAFVESLGLTFNPYTTQIEPHDYMAELFDALRRFNTILIDFNRDVWGYISLGYFKQKLKEGEVGSSTMPHKVNPIDFENSEGNLGIANAVLAHLGEKLPISRWQRDLTDSTVLRNMGVGFAQSLIAFDACLKGIGKLELNANRLNEDLDQAQEVLAEPIQTVMRRYNVEKPYEKLKALTRGQAMTRDMMVDFVNGNELAQVPSEERARLAELTPATYTGNAAEQAKQINELISKI

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2SA_E_5(2PTR)
PUR8_ECOLI
[Raw transfer]



2SA_E_5(2PTR)
PUR8_ECOLI
[Raw transfer]



2SA_E_5(2PTR)
PUR8_ECOLI
[Raw transfer]



2SA_E_5(2PTR)
PUR8_ECOLI
[Raw transfer]



AMP_I_9(2PTQ)
PUR8_ECOLI
[Raw transfer]



AMP_K_11(2PTQ)
PUR8_ECOLI
[Raw transfer]



AMP_C_9(2QGA)
?
[Raw transfer]



AMP_C_9(2QGA)
?
[Raw transfer]



AMP_B_7(4EFC)
?
[Raw transfer]



GOL_A_4(3BHG)
PUR8_LEGPH
[Raw transfer]



AMP_K_11(2PTQ)
PUR8_ECOLI
[Raw transfer]



AMP_I_9(2PTQ)
PUR8_ECOLI
[Raw transfer]



AMP_B_7(4EFC)
?
[Raw transfer]



AMP_B_7(4EFC)
?
[Raw transfer]
23 PsiBlast_CBE 92.2565% -28 - C4 -4NSL - ? -
1 PsiBlast_PDB 91.8465% -25 - C4 -3GZH - ? -
2 PsiBlast_PDB 91.6065% -23 - C4 -4NSL - ? -
24 PsiBlast_CBE 90.9265% -22 - C4 -2PTQ 5.0 PUR8_ECOLI
22 PsiBlast_CBE 90.6665% -24 - C4 -4NSL - ? -
3 PsiBlast_PDB 90.5865% -22 - C4 -2PTQ 2.7 PUR8_ECOLI
25 PsiBlast_CBE 90.5465% -23 - C4 -2PTR 8.9 PUR8_ECOLI
4 PsiBlast_PDB 90.1165% -25 - C4 -2PTR 10.0 PUR8_ECOLI
21 PsiBlast_CBE 89.3265% -25 - C4 -4NSL - ? -
34 Fugue 82.5963% 10 - C4 -2PTR 10.0 PUR8_ECOLI
49 HHSearch 81.0462% 8 - C4 -2PTR 8.9 PUR8_ECOLI
6 PsiBlast_PDB 80.5151% -12 - C4 -3BHG - PUR8_LEGPH -
44 HHSearch 79.8645% -27 - C4 -2QGA 5.6 ?
51 HHSearch 79.7862% 11 - C4 -2PTQ 5.1 PUR8_ECOLI
27 PsiBlast_CBE 79.5348% -24 - C4 -4EFC 5.1 ?
26 PsiBlast_CBE 79.2547% -6 - C4 -2QGA 5.6 ?
7 PsiBlast_PDB 78.9648% -21 - C4 -4EFC 2.9 ?
5 PsiBlast_PDB 75.7867% -49 - C4 -5E3V - ? -
50 HHSearch 75.0347% -6 - C4 -4EFC 2.9 ?
31 PsiBlast_CBE 74.9647% -6 - C4 -4MX2 - ? -
45 HHSearch 74.7153% 2 - C4 -3BHG 2.3 PUR8_LEGPH