@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VUG1: (2017-12-18 )
MFKHSIFLRIYAGLVILVVLVAVFGYLLVQIINYQRAQEYRESLTDGISYVISEGVARQPGKQQKIDWISDASDLLELPIYYTDASKVELSRTEKKRIEAQKSVVRYDASNSIAYVIIGLRDDPQHYLSIKVDKITERQMKALPIFVLDYLMFYPGQEQEYLAKIQKHFSYPINIQNIQDVNLDSEQIGRLLQDQSVMLYKDSATVRGTTISIVSPIPNHPAQVLVLGPVPMFNWMPLQLSAGITLFSLFLLSLGVYGLILPLERKIRQVRYALNRMKSGDLSLRVPIEGSDEMANLASSYNNMSDHIQRLIEAQRELMRAVSHELRTPVARIRFGTEMLAEEDDYNHRMHQVDMIDKDIEALNTLIDEIMTYAKLEQGTPSLDFAEIVLFEVLDQVAVETEALKTQKEIELIPPPLYVKVDAERRYLHRVVQNLVGNAVRYCDNKVRITGGIHNDGMAFVCVEDDGPGIPEQDRKRVFEAFARLDDSRTRASGGYGLGLSIVSRIAYWFGGEIKVDESPSLGGARFIMTWPAHRFKQPPLKTNKKAPA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



ANP_A_3(4KP4)
ENVZ_ECOLI
[Raw transfer]



ACP_A_3(5C93)
?
[Raw transfer]



ATP_A_5(5LFK)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]
32 HHSearch 88.0922% - - C2 -4I5S - ? -
17 PsiBlast_PDB 66.9427% 2 - C2 -4JAV 8.4 ?
16 PsiBlast_PDB 66.5527% 9 - C2 -3DGE - ? -
12 PsiBlast_PDB 64.2725% -2 - C2 -4U7O 9.0 ?
18 PsiBlast_PDB 63.0427% -5 - C2 -2C2A 7.4 ?
4 PsiBlast_PDB 62.6829% 57 - C2 -5LFK 7.3 ?
13 PsiBlast_PDB 62.2125% 4 - C2 -4ZKI - ? -
15 PsiBlast_PDB 61.7027% -3 - C2 -4JAU - ? -
39 HHSearch 61.6926% -1 - C2 -4JAV - ? -
14 PsiBlast_PDB 61.6027% 2 - C2 -4JAS - ? -
10 PsiBlast_PDB 60.3925% 13 - C2 -5C93 6.9 ?
2 PsiBlast_PDB 59.4529% 16 - C2 -4BIX - CPXA_ECOLI -
6 PsiBlast_PDB 59.4429% 68 - C2 -4BIV - CPXA_ECOLI -
37 HHSearch 59.4026% 1 - C2 -2C2A - ? -
34 HHSearch 59.2425% 21 - C2 -5C93 - ? -
36 HHSearch 59.0931% 18 - C2 -4KP4 - ENVZ_ECOLI -
33 HHSearch 58.8424% 14 - C2 -4U7O - ? -
7 PsiBlast_PDB 58.7429% 25 - C2 -4CB0 7.2 CPXA_ECOLI
1 PsiBlast_PDB 58.6729% 57 - C2 -4BIW 9.1 CPXA_ECOLI
3 PsiBlast_PDB 58.0829% 19 - C2 -4BIY - CPXA_ECOLI -