@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VUZ6: (2017-12-21 )
MKFERGIGFFALIFSILVIGAFIALSIYLIRLDNIIREKFEGQRWDIPAKVFARPLEIYNNAPITQANFTQELKLLGYKTSSNYDKSGTYVAQGSNMYVHTRGFDYGDSVEPEQVLELSFANDQVVEVRSTKPSSTGVARLEPLLIGGIYPQHNEDRVLIKLNSVPKPLIEALISTEDRNFYHHHGISIRGTARALVSNVTGGRRQGGSTLTQQLVKNFYLTPERTLKRKVNEALMALLIELHYSKDEILEAYLNEVNLGQNGNYSINGYGLAAQFYFGLPLRELNVAQQAYLVGLVQGPSLYNPWKNPEGAKNRRDTVLNNMRVMGYLTQAEYETEIARPLNVLSKPSLGPAKFPDFLDIVRRQLRTEYQESDLTNQGLRIFTTLDPIAQTQVQNAFKASVERLANSNPARLKNLQGAVLIAHPENGELIAAVGSTQDFTGFNRALDAKRQVGSLLKPVIYLSAIESGRYNWASQIEDAPISVPVDGGKSWTPKNYSGGGHGIVSLSEALANSYNLSAVRLGQEFGLSTFTNNLRKFGVESTIPAYPSIFLGAVNMSPMEVLGIYENFATGGFKYPTRAIRSVVDANGHLLDRYGLNVQETIDPSVGYIMNYGLQQVMSSGTGRAAYNSLSPALKLAGKSGTTNDTRDSWFAGYSGNHVAVVWLGLDDNKVTGLTGSSGALPVWINVMKQLRQTPVNLRQPDSVQWQWIDHASGDLSAQACDGAMYIPMLAHTVPHRATPCGAPYYQVDPTYTPQSDNTIPEPEDDNTDSYIRESENQMEQDLSNNTRIISSGSYNN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

63U_A_2(5HLA)
PBPB_ECOLI
[Raw transfer]



AZR_A_3(5HLB)
PBPB_ECOLI
[Raw transfer]



2U4_A_2(4OON)
PBPA_PSEAE
[Raw transfer]



AIX_A_2(5HL9)
PBPB_ECOLI
[Raw transfer]



CB9_B_3(3ZGA)
?
[Raw transfer]



PNM_A_3(3UDI)
?
[Raw transfer]



AIX_B_3(3ZG8)
?
[Raw transfer]



GOL_B_4(3ZG7)
?
[Raw transfer]



TLA_B_3(3ZG7)
?
[Raw transfer]



MES_F_4(2V2F)
?
[Raw transfer]
31 HHSearch 86.8136% 0 - C1 -5HLB - PBPB_ECOLI -
4 PsiBlast_PDB 86.4236% -1 - C1 -5HLB 3.6 PBPB_ECOLI
2 PsiBlast_PDB 83.1036% -1 - C1 -5HL9 4.8 PBPB_ECOLI
3 PsiBlast_PDB 80.6236% -0 - C1 -5HLA 4.3 PBPB_ECOLI
1 PsiBlast_PDB 80.3036% 6 - C1 -5FGZ - PBPB_ECOLI -
5 PsiBlast_PDB 79.3736% -1 - C1 -3FWL - PBPB_ECOLI -
35 HHSearch 75.6232% -20 - C1 -5U2G - PBPA_HAEIN -
34 HHSearch 72.9632% -19 - C1 -5U2G - PBPA_HAEIN -
25 Fugue 64.6632% -8 - C1 -3UDI 3.1 ?
39 HHSearch 62.4727% 22 - C1 -2OLV - ? -
11 PsiBlast_PDB 59.5827% 20 - C1 -2OLV - ? -
33 HHSearch 58.7732% -13 - C1 -4OON 4.4 PBPA_PSEAE
7 PsiBlast_PDB 56.6033% 7 - C1 -3ZGA 3.3 ?
38 HHSearch 56.2627% 48 - C1 -3DWK - ? -
8 PsiBlast_PDB 56.1333% 6 - C1 -3ZG9 - ? -
41 HHSearch 55.1532% 18 - C1 -3ZG9 - ? -
9 PsiBlast_PDB 55.0432% 6 - C1 -3ZG7 3.6 ?
6 PsiBlast_PDB 54.9933% 7 - C1 -3ZG8 4.4 ?
40 HHSearch 54.7232% 18 - C1 -3ZG8 - ? -
10 PsiBlast_PDB 51.9227% 58 - C1 -2OLU - ? -