@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VV06: (2017-12-21 )
MSQPLFKKVAFIGLGLIGSSLARVIVVEKLATTIVASTRSQKTLEDAKSLGLIQEGFSDPVEAVKGADLVVLALPVRATQKVLEQIKPYLSEATIVTDVGSTKGNVVDAAKAVFGEDLPAGFVPGHPIAGIEHTGVHAGKVDLFANHKVILTPLPTSAEWAVEKLIQLWSAAKAEVICMDVAKHDEVLAHTSHLPHLMAFNLVEQLANREDNLDIFRYAAGGFRDFSRIAASDPQMWHDIFFANKTAILNAVDGFEKQLTVLRKLIENEDSHALMGLLGHAQAARQHFNHMLAKKPLMEKNKVTQQFSILPGNKAFKGKFTVPGDKSVSHRSIMFGAIAEGTTHVTGFLEGEDALATLQAFRDMGVSIEGPKNGEVTIHGVGMHGLKAPASALYMGNSGTSMRLLSGMLSAQKFDSVMTGDASLSKRPMERIAKPLRLMGAQIQTTGEKGTPPVSITGGQQLKGIQYDLPMASAQVKSGILLAGLWAEGETSVTEPEPTRDHTERMLRAFGYDVKTEGNKISLVGGGKLVGTNIQVPSDISSAAFFMVGAAITEGADVVLEAVGINPTRTGVIEILKQMGADLTVENERIAGGEPIADIHIKGSRTLKGIHMPEDQVPLAIDEFPALFIAAACAEGQTVLTGAAELRVKESDRIQVMADGLKIMGIDCTPTEDGIIIEGKGKSGDWSPIFAGGEIESHHDHRIAMSFSMAGLRTSGPITIHGTETVATSFPTFTELANRAGLTIEVSQ

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GG9_A_2(2PQD)
AROA_AGRSC
[Raw transfer]




GG9_A_2(2PQB)
AROA_AGRSC
[Raw transfer]




GG9_A_2(2PQB)
AROA_AGRSC
[Raw transfer]




RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]




RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]




S3P_A_4(2GG6)
AROA_AGRSC
[Raw transfer]




S3P_A_2(2GGA)
AROA_AGRSC
[Raw transfer]




S3P_A_2(2GGD)
AROA_AGRSC
[Raw transfer]




S3P_A_2(4ZND)
AROA_COXBU
[Raw transfer]




GPJ_A_3(2GGA)
AROA_AGRSC
[Raw transfer]




GPJ_A_3(2GGD)
AROA_AGRSC
[Raw transfer]




1 PsiBlast_PDB 90.75100% -92 - C3 -5BUF - ? -
2 PsiBlast_PDB 83.02100% - - C3 -5BS5 - ? -
76 HHSearch 82.7299% - - C3 -5BS5 - ? -
77 HHSearch 80.88100% 14 - C3 -5BUF - ? -
8 PsiBlast_PDB 75.3548%-106 - C3 -3RMT - AROA1_BACHD -
75 HHSearch 70.6750% -86 - C3 -3RMT - AROA1_BACHD -
82 HHSearch 68.2046% -87 - C3 -1RF6 - AROA_STRPN -
79 HHSearch 67.0747% -27 - C3 -2PQB 9.4 AROA_AGRSC
10 PsiBlast_PDB 67.0646% -63 - C3 -1RF5 - AROA_STRPN -
78 HHSearch 66.4047% -27 - C3 -2PQC 6.9 AROA_AGRSC
17 PsiBlast_PDB 66.1947% -9 - C3 -2PQB 9.3 AROA_AGRSC
81 HHSearch 65.9853% -10 - C3 -3SLH - AROA_COXBU -
80 HHSearch 65.5253% -12 * C3 *3SLH - AROA_COXBU -
36 PsiBlast_CBE 65.4846% -56 - C3 -1RF6 - AROA_STRPN -
13 PsiBlast_PDB 65.3947% -7 - C3 -2PQD 9.0 AROA_AGRSC
11 PsiBlast_PDB 65.3946% -55 - C3 -1RF6 - AROA_STRPN -
16 PsiBlast_PDB 65.3347% -8 - C3 -2GGA 5.1 AROA_AGRSC
15 PsiBlast_PDB 65.2147% -7 - C3 -2GG6 4.5 AROA_AGRSC
39 PsiBlast_CBE 65.0546% -53 - C3 -1RF4 - AROA_STRPN -
38 PsiBlast_CBE 64.9546% -53 - C3 -1RF4 - AROA_STRPN -
18 PsiBlast_PDB 64.8547% -8 - C3 -2PQC 6.9 AROA_AGRSC
12 PsiBlast_PDB 64.6247% -5 - C3 -2GGD 5.0 AROA_AGRSC
6 PsiBlast_PDB 62.3752% -11 - C3 -4ZND 4.3 AROA_COXBU