@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VV24: (2017-12-21 )
MDKFLITGGVKLEGEVRISGAKNAALPLLAAMILADSPITLTNVPNLKDVNTLVKLIGGLGVTISYENDTVKADTSTLDNQFAPYELVKTMRASILVLGPLLAHYGNAKVSLPGGCAIGSRPVDQHLKALEALGAHIEVENGYVHATVDGRLKGGEVVFDMVTVGGTENILMAAALADGVTTIRNAAREPEITDLAQMLIKMGAKIEGLDTDTLVVTGVESLHGCEYAVVADRIETGSYLAAAAITGGRVKTTHTDPSLLEAVLDKFEEMGAEVTRGDDWIELDMLGKRPKAVSFRTLPHPEFPTDMQAQIMAVNAIGRGFATISETIFENRFMHVPELSRMGANIQVEGHDAVVTGVEKLQAAPVMATDLRASFSLVLAALVAEGDTLIDRIYHIDRGYEHVEEKLQGLGAKIKRVS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD1_D_4(1UAE)
MURA_ECOLI
[Raw transfer]




UD1_A_6(2RL2)
MURA_HAEIN
[Raw transfer]




EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]




UD1_A_3(2RL1)
MURA_HAEIN
[Raw transfer]




EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]




0V5_A_11(5U4H)
?
[Raw transfer]




0V5_B_17(5U4H)
?
[Raw transfer]




0V5_B_17(5U4H)
?
[Raw transfer]




FCN_G_7(1UAE)
MURA_ECOLI
[Raw transfer]




GG6_A_5(2RL2)
MURA_HAEIN
[Raw transfer]




PEG_A_3(3ZH4)
MURA1_STRPI
[Raw transfer]




1 PsiBlast_PDB 99.0399%-111 - C7 -5U4H 3.5 ?
49 HHSearch 98.88100%-109 - C7 -5U4H 3.3 ?
21 PsiBlast_CBE 98.6799%-109 - C7 -5U4H 3.3 ?
5 PsiBlast_PDB 86.5958%-105 - C7 -1UAE 6.8 MURA_ECOLI
3 PsiBlast_PDB 85.3158%-109 - C7 -1NAW - MURA_ENTCC -
4 PsiBlast_PDB 83.3658%-111 - C7 -3SPB - MURA_ENTCC -
6 PsiBlast_PDB 82.7558%-104 - C7 -1A2N - MURA_ECOLI -
9 PsiBlast_PDB 74.5657% -23 - C7 -2RL2 5.6 MURA_HAEIN
8 PsiBlast_PDB 74.0857% -26 - C7 -2RL1 5.8 MURA_HAEIN
24 PsiBlast_CBE 73.0263% -10 - C7 -5BQ2 - MURA_PSEAE -
36 HHSearch 72.5750% -49 - C7 -5UJS - MURA_CAMJE -
22 PsiBlast_CBE 72.5763% -10 - C7 -5BQ2 - MURA_PSEAE -
2 PsiBlast_PDB 72.5463% -10 - C7 -5BQ2 - MURA_PSEAE -
23 PsiBlast_CBE 72.2563% -10 - C7 -5BQ2 - MURA_PSEAE -
35 HHSearch 72.1863% -9 - C7 -5BQ2 - MURA_PSEAE -
37 HHSearch 70.9150% -49 - C7 -5UJS - MURA_CAMJE -
11 PsiBlast_PDB 70.8550% -48 - C7 -5UJS - MURA_CAMJE -
7 PsiBlast_PDB 69.6557% -0 - C7 -3VCY - MURA_VIBFM -
27 PsiBlast_CBE 69.6157% 3 - C7 -3VCY - MURA_VIBFM -
30 PsiBlast_CBE 68.4056% -5 - C7 -4R7U - MURA_VIBCH -
14 PsiBlast_PDB 66.3245% -43 - C7 -2YVW 7.2 MURA_AQUAE
16 PsiBlast_PDB 63.0341% -48 - C7 -3ZH4 2.1 MURA1_STRPI
56 HHSearch 62.1242% -36 * C7 *2YVW 5.9 MURA_AQUAE