@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VV76: (2017-12-22 )
MATAVNCNICFIGGGNMAQALIGGLISRGLPPTRITVSDPVEQIRQLLQEKEVHVTQDNTAAIQNADVVVLAVKPQVLANVLRPLKGLLSDKLVISIIAGAEIKTISNLIDSERIVRVMPNTPALVQTGAHGIYATDVVGASDRELTSQILAATGLTIWVNSEAQIDAVTAVSGSGPAYFFYLMESMIRAGKNLGLDEKVATALTLQTALGAAQMAITSSNTPSELRKNVTSPNGTTQAALEVFDRAQISQNIQSALAVAQKRSQELAQELSDSAK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_E_12(5UAT)
P5CR1_HUMAN
[Raw transfer]




NAD_A_6(2IZZ)
P5CR1_HUMAN
[Raw transfer]




NDP_C_8(5UAT)
P5CR1_HUMAN
[Raw transfer]




NAP_A_3(3TRI)
?
[Raw transfer]




GOL_A_15(2RCY)
?
[Raw transfer]




NAP_A_11(2RCY)
?
[Raw transfer]




PRO_A_6(5UAU)
P5CR1_HUMAN
[Raw transfer]




PRO_C_11(5UAU)
P5CR1_HUMAN
[Raw transfer]




PRO_B_8(5UAU)
P5CR1_HUMAN
[Raw transfer]




PRO_D_14(5UAU)
P5CR1_HUMAN
[Raw transfer]




1 PsiBlast_PDB 86.9242% -60 - C3 -3TRI 5.4 ?
87 HHSearch 85.0843% -35 - C3 -3TRI - ? -
28 PsiBlast_CBE 78.9037% -32 - C3 -5BSH - ? -
27 PsiBlast_CBE 78.4737% -35 - C3 -5BSH - ? -
88 HHSearch 77.7232% -49 - C3 -5UAW - P5CR1_HUMAN -
24 PsiBlast_CBE 77.2837% -40 - C3 -5BSH - ? -
48 PsiBlast_CBE 76.1137% -12 - C3 -5BSE - ? -
49 PsiBlast_CBE 75.9737% -11 - C3 -5BSE - ? -
22 PsiBlast_CBE 75.8837% -15 - C3 -5BSH - ? -
55 PsiBlast_CBE 75.8037% -14 - C3 -5BSE - ? -
21 PsiBlast_CBE 75.6437% -14 - C3 -5BSH - ? -
56 PsiBlast_CBE 74.9337% -11 - C3 -5BSE - ? -
82 PsiBlast_CBE 74.9034% -31 - C3 -2IZZ - P5CR1_HUMAN -
30 PsiBlast_CBE 74.6037% -11 - C3 -5BSG - ? -
39 PsiBlast_CBE 74.5937% -13 - C3 -5BSF - ? -
37 PsiBlast_CBE 74.4737% -11 - C3 -5BSG - ? -
46 PsiBlast_CBE 74.4337% -13 - C3 -5BSF - ? -
51 PsiBlast_CBE 74.4237% -12 - C3 -5BSE - ? -
2 PsiBlast_PDB 74.3637% -14 - C3 -5BSE - ? -
73 PsiBlast_CBE 74.2234% -41 - C3 -5UAU - P5CR1_HUMAN -
74 PsiBlast_CBE 72.1634% -28 - C3 -5UAU 3.3 P5CR1_HUMAN
76 PsiBlast_CBE 71.6934% -29 - C3 -5UAU 3.3 P5CR1_HUMAN
12 PsiBlast_PDB 71.2334% -28 - C3 -5UAU 3.3 P5CR1_HUMAN
75 PsiBlast_CBE 71.1334% -29 - C3 -5UAU 3.3 P5CR1_HUMAN
92 HHSearch 63.3330% -60 - C3 -2RCY 3.0 ?
17 PsiBlast_PDB 55.0133% -86 - C3 -2RCY 5.0 ?