@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VV83: (2017-12-22 )
MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQID

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_2(2HT0)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(2IIE)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(2IIF)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(1OUZ)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(1OWF)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(1OWF)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(1OWG)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(1IHF)
IHFA_ECOLI
[Raw transfer]
-
NACID_E_3(1IHF)
IHFA_ECOLI
[Raw transfer]
-
NACID_D_2(1P71)
DBH_NOSS1
[Raw transfer]
-
NACID_D_2(1P71)
DBH_NOSS1
[Raw transfer]
-
5 PsiBlast_PDB 91.1268% -21 - C2 -2HT0 4.8 IHFA_ECOLI
1 PsiBlast_PDB 90.6968% -23 - C2 -1IHF 8.3 IHFA_ECOLI
8 PsiBlast_PDB 90.1266% -14 - C2 -2IIF 7.6 IHFA_ECOLI (first)
41 HHSearch 89.7366% -16 - C2 -1OWF 8.2 IHFA_ECOLI
7 PsiBlast_PDB 89.5667% -18 - C2 -2IIE 7.7 IHFA_ECOLI (first)
3 PsiBlast_PDB 88.3968% -16 - C2 -1OWF 8.2 IHFA_ECOLI
6 PsiBlast_PDB 88.3568% -18 - C2 -5J0N - IHFA_ECOLI -
2 PsiBlast_PDB 88.2168% -17 - C2 -1OUZ 1128214396763122245304320.0 IHFA_ECOLI
4 PsiBlast_PDB 87.3568% -11 - C2 -1OWG 1128214396763122245304320.0 IHFA_ECOLI
53 Fugue 81.5066% 101 - C2 -1IHF 8.3 IHFA_ECOLI
34 HHSearch 76.6141% -36 - C2 -4QJN - DBH_STAAM -
9 PsiBlast_PDB 76.1741% -38 - C2 -4QJN - DBH_STAAM -
10 PsiBlast_PDB 74.9541% -28 - C2 -4QJU - DBH_STAAM -
30 PsiBlast_CBE 73.6136% -30 - C2 -4PT4 - DBH_MYCTO (first) -
21 PsiBlast_CBE 72.5441% -13 - C2 -4QJU - DBH_STAAM -
38 HHSearch 71.6339% -7 - C2 -1HUE - DBH_GEOSE -
12 PsiBlast_PDB 70.9139% -7 - C2 -1HUE - DBH_GEOSE -
36 HHSearch 70.2734% -42 - C2 -5EKA - DBH_THET8 -
46 HHSearch 70.2334% -36 - C2 -4YF0 - DBHA_ECOLI -
26 PsiBlast_CBE 69.5037% -7 - C2 -1P51 - DBH_NOSS1 -
40 HHSearch 67.0237% 2 - C2 -1P71 1128214396763122245304320.0 DBH_NOSS1
23 PsiBlast_CBE 66.6037% -3 - C2 -1P71 1128214396763122245304320.0 DBH_NOSS1