@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VVG9: (2017-12-23 )
MSDKTQKQTTKIVQFEQESYVDPKGKTLTSSLGVPVSDNQNSLKIGGRGPTLLEDFLLRDKLIHFDRERIPERVVHARGFGAHGYFEAYKGNEKWTKAHFLTDTTQSTPIFVRISTVQGGRGSADVVRDVRGFSIKFYTQEGNYDLVGNNIPVFFIQDAIKFPDFVHAVKPEDPNEVPTGQSAHDTFWDFISLNTETAHMTTWVMSDRAIPRNLRSIQGFGVHTFRLINAQGKAHLVKFHWTPKQGVAQVVWDEALKLNGKDPDFHRRDLWDAIENGNYPEWELGAQIFTEEEASEWDFDVLDPTKLVPEELVPVTPLGRFVLNRNTDDFFAETEQVAFSPANIVSGIDFSNDPLLQGRLFSYTDTHLHRLGTANFNQIPINKPVCPFHTNRRGGFANHEVYKGKANYEPNSVGDNWPREVGQKEGGFSSYPEHVEASKLRIRPESFADHFSQATLHYMSLEKHEQQHIKDAYAFELSKVQDEEIRQRVVDHVLVNIDEDLATCVANELGLKPSVKPESKKQSKVKISKKLSTEAFPAPDIKQRKIAVLVHDGANATSVDAVRAWAESENAVAEVLAPTTAPVKSKDGKEITVDGRQNGEPSVTYDAIVVIDGDNLEAFKADGVAKHYVLETYKHLKSIYLLGDKESLLEYFGIEQDNAIFSSKNFEEHQDKFKKAIQNHRLWSRENVVASIPA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_A_8(3VU3)
CATE_ECOLI
[Raw transfer]



HEM_A_4(1QWL)
CATA_HELPY
[Raw transfer]
8 PsiBlast_PDB 84.6051% 3 - C8 -5BV2 - ? -
34 PsiBlast_CBE 84.5851% 4 - C8 -1GGE - CATE_ECOLI -
41 PsiBlast_CBE 84.5751% 3 - C8 -5BV2 - ? -
29 PsiBlast_CBE 84.5551% 3 - C8 -4BFL - ? -
43 PsiBlast_CBE 84.5051% 4 - C8 -1P81 - CATE_ECOLI -
21 PsiBlast_CBE 84.4351% 5 - C8 -1QF7 - CATE_ECOLI -
3 PsiBlast_PDB 84.4151% 0 - C8 -1IPH - CATE_ECOLI -
30 PsiBlast_CBE 84.4051% 0 - C8 -1IPH - CATE_ECOLI -
45 PsiBlast_CBE 84.3851% 4 - C8 -3TTT - CATE_ECOLI -
31 PsiBlast_CBE 84.3651% 0 - C8 -1IPH - CATE_ECOLI -
23 PsiBlast_CBE 84.3651% 4 - C8 -1QF7 - CATE_ECOLI -
12 PsiBlast_PDB 84.3651% 3 - C8 -4ENW - CATE_ECOLI -
92 PsiBlast_CBE 84.3151% 3 - C8 -3TTU - CATE_ECOLI -
66 PsiBlast_CBE 84.3151% 3 - C8 -1GGK - CATE_ECOLI -
42 PsiBlast_CBE 84.3051% 4 - C8 -1P81 - CATE_ECOLI -
75 PsiBlast_CBE 84.2951% 1 - C8 -1GGJ - CATE_ECOLI -
53 PsiBlast_CBE 84.2951% 4 - C8 -4ENW - CATE_ECOLI -
37 PsiBlast_CBE 84.2651% 3 - C8 -4ENS - CATE_ECOLI -
28 PsiBlast_CBE 84.2551% 3 - C8 -4BFL - ? -
36 PsiBlast_CBE 84.2451% 2 - C8 -4ENS - CATE_ECOLI -
6 PsiBlast_PDB 83.8351% 4 - C8 -3VU3 11.7 CATE_ECOLI
131 HHSearch 62.6344% -29 - C8 -1QWL 12.5 CATA_HELPY