@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3TY40: (2017-12-13 )
MTREFSLQNTRNIGIMAHIDAGKTTATERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAATTAQWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFANKMDKIGADFLYSVSTLHDRLQANAHPIQLPIGAEDDFTGIIDLVTMKAEMYTNDLGTEIEETEIPEEYRELAEEWREKLVEAVAETDEELTLKYLEGEEITEAELKEGIRRATVNVEFYPVLCGSAFKNKGVQLLLDAVLDYLPSPLDIPAIKGIDPKTDEEVERPADDSAPFSALAFKVMTDPFVGRLTFFRVYSGVLQSGSYVQNATKGKRERVGRILQMHANSRSEISEVYAGDIAAAVGLKDTTTGDTLCDEKSLVILESMEFPEPVIQVAIEPKSKADQDKMGVALQKLSEEDPTFRAETNVETGETIIAGMGELHLDIIVDRMRREFKVEANVGAPQVSYRETFRAGTQAEGKFVRQSGGKGQYGHVWIEFTPNEEGAGFEFENAIVGGVVPREYIPAVETGLKDAMENGVLAGYPLVDIKAKLYDGSYHDVDSNETAFRVAASMALRAAAKKANPVILEPIMAVEVVIPEDYLGDVMGHVTARRGRVEGMEARAGGQQVVRAMVPLAEMFGYATTLRSATQGRGTFTMTFDHYEDVPKSVQEEIIKKNGGKAE

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GDP_A_2(2BM0)
?
[Raw transfer]




GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]




GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]




GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]




GDP_A_2(2BM0)
?
[Raw transfer]




GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]




GDP_B_2(1DAR)
?
[Raw transfer]




124 HHSearch 83.9078% -18 - C2 -2XEX - EFG_STAAU -
1 PsiBlast_PDB 81.0177% -13 - C2 -2XEX - EFG_STAAU -
125 HHSearch 79.1066% -36 - C2 -2BM0 6.6 ?
155 Fugue 78.9864% -80 - C2 -1ELO - ? -
5 PsiBlast_PDB 78.7165% -36 - C2 -2J7K 7.2 EFG_THETH
10 PsiBlast_PDB 78.6465% -36 - C2 -2BM0 6.6 ?
153 Fugue 78.4365% -36 - C2 -4M1K 5.9 ?
7 PsiBlast_PDB 77.9965% -36 - C2 -4M1K 5.9 ?
8 PsiBlast_PDB 77.6065% -34 - C2 -4MYU 6.3 EFG_THETH
11 PsiBlast_PDB 77.4365% -34 - C2 -1FNM 7.3 EFG_THETH
9 PsiBlast_PDB 76.8865% -36 - C2 -2BM1 7.4 EFG_THETH
2 PsiBlast_PDB 76.7666% -32 - C2 -2OM7 - ? -
6 PsiBlast_PDB 76.2265% -33 - C2 -4MYT 5.4 EFG_THETH
4 PsiBlast_PDB 75.7166% - * C3 *1JQM - EFG_THETH -
13 PsiBlast_PDB 74.6765% -20 - C2 -3IZP - ? -
3 PsiBlast_PDB 74.1966% -42 - C2 -2EFG 7.2 EFG_THET8
126 HHSearch 73.1265% - * C2 *1ZN0 - EFG_THET8 -
12 PsiBlast_PDB 72.7065% - - C2 -1PN6 - EFG_THETH -
15 PsiBlast_PDB 71.3762% - - C2 -1ZN0 - EFG_THET8 -
127 HHSearch 66.8137% -35 - C2 -2DY1 - ? -
156 Fugue 37.5265% 39 - C2 -1DAR Error ?