@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3TZS5: (2017-12-17 )
MTQLKKLCQNRLAIVLTAVFFFWLKTIIAYYADFSLGVEGTIQYFILWINPIATTLLFFGLSLYIKKPKPALAILLIIDILNTLLLYLNIIFYREFTDFITVKSVLGFSKVSQGLSGSSFSLMKPHDVIYWLDIAVFIGLLVWLKVKKIPIKSNPVGKPMAIAVTCLSGLIFSGNLALSEANRPQLLQRTFDRSYIVKYLGIDAYTIYDGIKTGMTSSVRAHASSNGIDEVLDYTKKHYAEPNPETFGIAKGKNVIVLHLESFQQFLINMKVDGQEVTPFLNSIFQNQATISFDNFFHEVGQGKTSDAENMLETGTFGLPQGSLFTELGSDNVFQAAPAILGQKQGYTSAVFHGNVASFWNRDHVYKNLGYDNFFDRSYFDESDETLGYGILDKDLFRESAQYLEHLQQPFYTKFLSVTNHTPYYTDDKNFDFPSLNTGNSTVDNYVRTAHYLDQSLEQFFTYLKKSGIYQNSIFVIYGDHFGISNTDNKDLASALGKDPDTWDEFDNAQMQRVPLMIHMPGYTKGTVNHEYGGEIDVLPTLLHLLGIDDKDYLHFGTDLLSSQHDQVVAFRNGNFVTPKYTVLGGKAYNNQTGEIIDTKAAGIDEEISKDQEKVKTALSLSDKLNQENLLRFYVPNGFETIDPKKYDYKNEAERNEAIEKQKGEHSTSVFSKNGNKTTTNLYPVTRTDVEQQKNNQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GP9_A_4(2W5R)
LTAS_STAAW
[Raw transfer]



GP9_A_4(2W5R)
LTAS_STAAW
[Raw transfer]



GP9_A_4(2W5T)
LTAS_STAAW
[Raw transfer]



GP9_A_4(2W5S)
LTAS_STAAW
[Raw transfer]



EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]



EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]



EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]
28 PsiBlast_CBE 86.7757% -9 - C1 -4UOR - ? -
1 PsiBlast_PDB 86.5857% -8 - C1 -4UOO - ? -
29 PsiBlast_CBE 86.4657% -6 - C1 -4UOR - ? -
26 PsiBlast_CBE 86.3657% -6 - C1 -4UOR - ? -
2 PsiBlast_PDB 86.0757% -5 - C1 -4UOR - ? -
27 PsiBlast_CBE 85.9957% -4 - C1 -4UOR - ? -
25 PsiBlast_CBE 85.9657% -5 - C1 -4UOR - ? -
47 HHSearch 85.9559% -5 - C1 -4UOR - ? -
30 PsiBlast_CBE 85.8757% -5 - C1 -4UOR - ? -
49 HHSearch 80.3151% -2 - C1 -2W8D - LTAS2_BACSU -
3 PsiBlast_PDB 79.7150% 3 - C1 -2W8D - LTAS2_BACSU -
48 HHSearch 79.3451% 1 - C1 -2W8D - LTAS2_BACSU -
50 HHSearch 71.2747% 39 - C1 -2W5Q 2.7 LTAS_STAAW
7 PsiBlast_PDB 71.1246% 37 - C1 -2W5R 3.5 LTAS_STAAW
36 Fugue 70.7646% 42 - C1 -2W5Q 2.7 LTAS_STAAW
6 PsiBlast_PDB 70.7346% 39 - C1 -2W5T 3.4 LTAS_STAAW
4 PsiBlast_PDB 70.6246% 39 - C1 -2W5Q 2.7 LTAS_STAAW
5 PsiBlast_PDB 70.5646% 39 - C1 -2W5S 3.8 LTAS_STAAW
46 HHSearch 70.2846% 40 - C1 -2W5R 3.5 LTAS_STAAW
37 Fugue 59.8023% -50 - C1 -5I5H - YEJM_ECOLI -