@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U145: (2017-12-19 )
MANPTIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGDEPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDNPEMRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYFSEETEEEDDDTIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRKRGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQRLERLPEMIEQVSMNQNLRISSAVLNDIIMDAVAINPTPTDKGKRLKIFYATQVAVKPPTFVVFVNEEELMHFSYERFLENQIRKAFTFEGTSIRIIPRRRK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_4(2HJG)
DER_BACSU
[Raw transfer]



GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]



GDP_B_8(5X4B)
?
[Raw transfer]



GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]



GDP_C_3(2DYK)
?
[Raw transfer]



GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]



GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]



GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]



GDP_D_4(2DYK)
?
[Raw transfer]



GDP_A_3(5X4B)
?
[Raw transfer]



GDP_A_3(5X4B)
?
[Raw transfer]
1 PsiBlast_PDB 81.2768% -59 - C4 -4DCS - DER_BACSU -
4 PsiBlast_PDB 80.3267% -54 - C4 -2HJG 6.7 DER_BACSU
2 PsiBlast_PDB 79.8468% -55 - C4 -4DCU 7.2 DER_BACSU
3 PsiBlast_PDB 79.2468% -54 - C4 -4DCV - DER_BACSU -
90 HHSearch 61.2339% 9 - C4 -1MKY - DER_THEMA -
6 PsiBlast_PDB 58.6638% 6 - C4 -1MKY - DER_THEMA -
21 PsiBlast_CBE 57.6973%-156 - C4 -4KYU 7.8 DER_BACSU
7 PsiBlast_PDB 56.6673%-129 - C4 -4KYU 6.6 DER_BACSU
22 PsiBlast_CBE 56.6474%-156 - C4 -5X4B 8.0 ?
111 HHSearch 56.2074%-133 - C4 -5X4B 7.5 ?
89 HHSearch 55.6240% -18 - C4 -3J8G - DER_ECOLI -
8 PsiBlast_PDB 55.4274%-136 - C4 -5X4B 7.5 ?
5 PsiBlast_PDB 52.4238% -14 - C4 -3J8G - DER_ECOLI -
9 PsiBlast_PDB 47.1342%-122 - C4 -2DYK 7.7 ?
23 PsiBlast_CBE 46.1742%-124 - C4 -2DYK 7.8 ?
108 HHSearch 45.9434%-160 - C4 -3GEH - MNME_NOSS1 -
10 PsiBlast_PDB 44.6034%-156 - C4 -3GEH - MNME_NOSS1 -
93 HHSearch 43.6921% -40 - C4 -3IEV - ERA_AQUAE -
92 HHSearch 42.8021% -39 - C4 -3R9X - ERA_AQUAE -
12 PsiBlast_PDB 42.0834%-137 - C4 -1XZQ - ? -
24 PsiBlast_CBE 33.1834% -50 - C4 -3IEU 8.1 ERA_ECOLI
16 PsiBlast_PDB 32.7834% -51 - C4 -3IEU 8.3 ERA_ECOLI