@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U146: (2017-12-19 )
MANKAELIEKVASATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRERAARKGRNPQTGEEIEIPASKVPAFKPGKALKDAVK

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_2(1OWG)
IHFB_ECOLI
[Raw transfer]
-
NACID_D_2(1OWG)
IHFB_ECOLI
[Raw transfer]
-
NACID_F_2(1P51)
DBH_NOSS1
[Raw transfer]
-
NACID_D_2(1P78)
DBH_NOSS1
[Raw transfer]
-
NACID_I_3(1P51)
DBH_NOSS1
[Raw transfer]
-
NACID_D_4(4QJU)
DBH_STAAM
[Raw transfer]
-
NACID_D_2(2HT0)
IHFB_ECOLI
[Raw transfer]
-
NACID_D_2(1P71)
DBH_NOSS1
[Raw transfer]
-
NACID_F_2(1P51)
DBH_NOSS1
[Raw transfer]
-
NACID_D_2(1P71)
DBH_NOSS1
[Raw transfer]
-
NACID_I_3(1P51)
DBH_NOSS1
[Raw transfer]
-
NACID_D_4(4QJU)
DBH_STAAM
[Raw transfer]
-
NACID_C_3(4QJU)
DBH_STAAM
[Raw transfer]
-
NACID_D_2(1OUZ)
IHFB_ECOLI
[Raw transfer]
-
NACID_D_2(1P78)
DBH_NOSS1
[Raw transfer]
-
NACID_D_2(1OWF)
IHFB_ECOLI
[Raw transfer]
-
NACID_D_2(1P71)
DBH_NOSS1
[Raw transfer]
-
NACID_D_2(1P71)
DBH_NOSS1
[Raw transfer]
-
NACID_D_2(1IHF)
IHFB_ECOLI
[Raw transfer]
-
4 PsiBlast_PDB 87.1079% -48 - C5 -4QJN - DBH_STAAM -
59 HHSearch 85.2179% -48 - C5 -4QJN - DBH_STAAM -
5 PsiBlast_PDB 85.0979% -28 - C5 -4QJU 6.3 DBH_STAAM
57 HHSearch 82.8780% -25 - C5 -1HUE - DBH_GEOSE -
21 PsiBlast_CBE 81.4079% -11 - C5 -4QJU 7.2 DBH_STAAM
2 PsiBlast_PDB 81.1380% -21 - C5 -1HUE - DBH_GEOSE -
53 HHSearch 79.3582% -23 - C5 -5FBM - DBH_STRMU -
1 PsiBlast_PDB 79.3582% -23 - C5 -5FBM - DBH_STRMU -
56 HHSearch 76.8680% -50 - C5 -1HUU - DBH_GEOSE -
43 Fugue 75.8874% -72 - C5 -1HUU - DBH_GEOSE -
3 PsiBlast_PDB 75.5580% -49 - C5 -1HUU - DBH_GEOSE -
54 HHSearch 73.6365% - - C5 -3RHI - ? -
61 HHSearch 72.3252% -55 - C5 -4YF0 - DBHA_ECOLI -
14 PsiBlast_PDB 71.4353% -84 - C5 -4YEY - DBHA_ECOLI -
68 HHSearch 71.0746% -24 - C5 -1OWF - IHFA_ECOLI -
7 PsiBlast_PDB 70.3861% -51 - C5 -5EKA - DBH_THET8 -
60 HHSearch 70.0653% -82 - C5 -1MUL - DBHA_ECOLI -
65 HHSearch 69.6251% -3 - C5 -1P71 1128214396763122245304320.0 DBH_NOSS1
58 HHSearch 69.3754% -66 - C5 -4P3V - DBHB_ECOLI -
29 PsiBlast_CBE 68.8847% -12 - C5 -2IIF - IHFA_ECOLI (first) -
28 PsiBlast_CBE 68.4252% -5 - C5 -1P51 4.8 DBH_NOSS1
27 PsiBlast_CBE 67.9252% -5 - C5 -1P51 5.6 DBH_NOSS1
66 HHSearch 67.7551% -9 - C5 -1P71 1128214396763122245304320.0 DBH_NOSS1
26 PsiBlast_CBE 67.3552% 1 - C5 -1P51 4.3 DBH_NOSS1
19 PsiBlast_PDB 66.8752% -3 - C5 -1P51 4.2 DBH_NOSS1
20 PsiBlast_PDB 66.7652% -3 - C5 -1P71 1128214396763122245304320.0 DBH_NOSS1
24 PsiBlast_CBE 65.9652% -13 - C5 -1P78 4.8 DBH_NOSS1
25 PsiBlast_CBE 64.8252% -8 - C5 -1P71 1128214396763122245304320.0 DBH_NOSS1
23 PsiBlast_CBE 64.2352% -14 - C5 -1P78 4.5 DBH_NOSS1
67 HHSearch 53.7640% 96 - C5 -1OWG Error IHFB_ECOLI
39 PsiBlast_CBE 52.6441% 90 - C5 -1OWF 3.4 IHFB_ECOLI
37 PsiBlast_CBE 50.1841% 97 - C5 -1OWG Error IHFB_ECOLI
38 PsiBlast_CBE 49.8741% 103 - C5 -1IHF 3.6 IHFB_ECOLI
40 PsiBlast_CBE 49.8441% 94 - C5 -1OUZ 2.0 IHFB_ECOLI
36 PsiBlast_CBE 48.6841% 97 - C5 -2HT0 5.3 IHFB_ECOLI