@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U182: (2017-12-19 )
MPQSIIEGAFALAKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVADSGRGMPVGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDTLTPVVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDTEISPSVSNDLLDEERADKNENNQLFEVE

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PU9)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUD)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4XTJ)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRX)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUC)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRV)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCS2
[Raw transfer]




4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]




1 PsiBlast_PDB 82.6975% 4 - C3 -4JUO - PARE_STRPN -
40 PsiBlast_CBE 57.7749% -12 - C2 -3ZKD - GYRB_MYCTU -
39 PsiBlast_CBE 57.5349% -22 - C2 -3ZKD - GYRB_MYCTU -
129 HHSearch 57.4452% -5 - C2 -3ZKB - GYRB_MYCTU -
14 PsiBlast_PDB 57.4049% -14 - C2 -3ZKB - GYRB_MYCTU -
130 HHSearch 57.2452% -5 - C2 -3ZKB - GYRB_MYCTU -
15 PsiBlast_PDB 57.2149% -21 - C2 -3ZKD - GYRB_MYCTU -
37 PsiBlast_CBE 56.9249% -13 - C2 -3ZKD - GYRB_MYCTU -
53 PsiBlast_CBE 56.6549% 1 - C2 -3ZKB - GYRB_MYCTU -
41 PsiBlast_CBE 56.6449% -11 - C2 -3ZKD - GYRB_MYCTU -
38 PsiBlast_CBE 56.1649% -7 - C2 -3ZKD - GYRB_MYCTU -
137 Fugue 56.0652% 16 - C2 -1EI1 8.1 GYRB_ECOLI
136 HHSearch 56.0546% 14 - C2 -1KIJ 7.5 GYRB_THET8
54 PsiBlast_CBE 55.9949% 2 - C2 -3ZKB - GYRB_MYCTU -
127 HHSearch 55.8853% 24 - C2 -1EI1 7.6 GYRB_ECOLI
24 PsiBlast_CBE 55.5881%-103 - C3 -3RAF - -
52 PsiBlast_CBE 55.3949% 7 - C2 -3ZKB - GYRB_MYCTU -
4 PsiBlast_PDB 55.2581%-104 - C3 -3K9F - PARE_STRPN -
21 PsiBlast_CBE 55.1481%-107 - C3 -4KPF - -
138 Fugue 55.1152% 27 - C2 -1EI1 8.1 GYRB_ECOLI
75 PsiBlast_CBE 54.8444% 14 - C2 -1KIJ 7.3 GYRB_THET8
20 PsiBlast_PDB 54.3951% 21 - C2 -4XTJ 9.8 GYRB_ECOLI
17 PsiBlast_PDB 54.2051% 23 - C2 -4WUB 9.7 GYRB_ECOLI
19 PsiBlast_PDB 53.9651% 22 - C2 -4WUD 9.9 GYRB_ECOLI
18 PsiBlast_PDB 53.9451% 22 - C2 -4WUC 10.2 GYRB_ECOLI
61 PsiBlast_CBE 53.2551% 23 - C2 -4PRX 7.8 GYRB_ECOLI
76 PsiBlast_CBE 52.8044% 15 - C2 -1KIJ 6.5 GYRB_THET8
60 PsiBlast_CBE 52.7251% 28 - C2 -4PU9 7.3 GYRB_ECOLI
63 PsiBlast_CBE 52.4651% 31 - C2 -1EI1 7.7 GYRB_ECOLI
62 PsiBlast_CBE 52.1951% 24 - C2 -4PRV 7.2 GYRB_ECOLI
64 PsiBlast_CBE 52.0951% 32 - C2 -1EI1 8.1 GYRB_ECOLI
133 HHSearch 49.9137% 13 - C2 -1S16 10.1 PARE_ECOLI
84 PsiBlast_CBE 48.8438% 23 - C2 -1S16 10.1 PARE_ECOLI
85 PsiBlast_CBE 48.1738% 26 - C2 -1S16 9.7 PARE_ECOLI
67 PsiBlast_CBE 48.0771% -44 - C2 -4MOT 6.0 ?
70 PsiBlast_CBE 47.9571% -46 - C2 -4LPB 6.5 ?
68 PsiBlast_CBE 47.9371% -44 - C2 -4MBC 5.6 ?
71 PsiBlast_CBE 47.8471% -44 - C2 -4EM7 5.2 ?
66 PsiBlast_CBE 47.8371% -43 - C2 -5BOD 5.8 ?
104 PsiBlast_CBE 47.4756% -98 - C2 -4BAE 7.7 GYRB_MYCS2 (first)
69 PsiBlast_CBE 47.1671% -43 - C2 -4MB9 4.6 ?
74 PsiBlast_CBE 45.2769% -38 - C2 -4URN 4.9 ?
72 PsiBlast_CBE 45.0869% -34 - C2 -4URN 5.0 ?
73 PsiBlast_CBE 42.6869% -22 - C2 -4URN 4.8 ?
143 Fugue 34.5155% 18 * C2 *1EI1 7.4 GYRB_ECOLI
141 Fugue 32.1447% 28 - C2 -1EI1 Error GYRB_ECOLI