@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U183: (2017-12-19 )
MENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVILRSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVITKRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEVIDAPEIFIES

Atome Classification :

(70 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_5(5NPP)
?
[Raw transfer]
-
NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



TR6_H_11(4Z2E)
?
[Raw transfer]



NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3FOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_G_6(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_E_3(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5CDP)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDP)
GYRA_STAAN
[Raw transfer]
-
NACID_V_7(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_V_11(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
TR6_F_9(4Z2E)
?
[Raw transfer]



NACID_E_5(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_V_13(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_W_15(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_V_11(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
14 PsiBlast_PDB 95.2171% -56 - C8 -4Z4Q - PARC_STRPN (first) -
9 PsiBlast_PDB 95.1571% -60 - C8 -3RAE 3.7 PARC_STRPN
7 PsiBlast_PDB 95.1271% -55 - C8 -3RAF 4.5 PARC_STRPN
33 PsiBlast_CBE 95.1171% -61 - C8 -4Z3O - PARC_STRPN (first) -
24 PsiBlast_CBE 94.9871% -57 - C8 -3RAF 4.2 PARC_STRPN
31 PsiBlast_CBE 94.8071% -56 - C8 -4Z53 - PARC_STRPN (first) -
10 PsiBlast_PDB 94.7871% -58 - C8 -4KOE - PARC_STRPN -
16 PsiBlast_PDB 94.7271% -58 - C8 -4I3H 4.1 ?
120 HHSearch 94.6571% -58 - C8 -4KOE - PARC_STRPN -
13 PsiBlast_PDB 94.6371% -58 - C8 -4Z3O - PARC_STRPN (first) -
32 PsiBlast_CBE 94.5971% -58 - C8 -4Z4Q - PARC_STRPN (first) -
26 PsiBlast_CBE 94.5571% -59 - C8 -3RAD 2.5 PARC_STRPN
23 PsiBlast_CBE 94.4671% -55 - C8 -4KOE - PARC_STRPN -
34 PsiBlast_CBE 94.4471% -61 - C8 -4I3H 5.8 ?
15 PsiBlast_PDB 94.4171% -56 - C8 -4Z53 - PARC_STRPN (first) -
11 PsiBlast_PDB 94.2571% -59 - C8 -4KPE - PARC_STRPN -
30 PsiBlast_CBE 94.2271% -57 - C8 -3K9F 4.3 PARC_STRPN
22 PsiBlast_CBE 94.2271% -53 - C8 -4KPE - PARC_STRPN -
21 PsiBlast_CBE 94.0871% -60 - C8 -4KPF - PARC_STRPN -
5 PsiBlast_PDB 94.0571% -68 - C8 -3KSB 4.3 PARC_STRPN
27 PsiBlast_CBE 94.0371% -59 - C8 -3LTN 3.5 PARC_STRPN
3 PsiBlast_PDB 94.0271% -57 - C8 -3K9F 4.3 PARC_STRPN
28 PsiBlast_CBE 93.9771% -68 - C8 -3KSB 3.2 PARC_STRPN
8 PsiBlast_PDB 93.8471% -55 - C8 -3RAD 5.0 PARC_STRPN
6 PsiBlast_PDB 93.8171% -59 - C8 -3LTN 3.9 PARC_STRPN
29 PsiBlast_CBE 93.7871% -65 - C8 -3KSA 4.3 PARC_STRPN
4 PsiBlast_PDB 93.4871% -64 - C8 -3KSA 4.7 PARC_STRPN
25 PsiBlast_CBE 93.1871% -57 - C8 -3RAE 3.1 PARC_STRPN
38 PsiBlast_CBE 85.2950% -66 - C8 -4Z2E 2.6 ?
37 PsiBlast_CBE 85.1050% -71 - C8 -4Z2E 2.6 ?
1 PsiBlast_PDB 84.0471% -65 - C8 -3FOE 4.1 PARC_STRPN
2 PsiBlast_PDB 82.7171% -66 - C8 -3FOF 4.2 PARC_STRPN
68 PsiBlast_CBE 82.5543% -26 - C8 -2Y3P 3.3 GYRA_ECOLI (first)
118 HHSearch 82.2248% -8 - C8 -5IWI 4.3 GYRA_STAAN (first)
47 PsiBlast_CBE 82.2148% -9 - C8 -5CDP 6.8 GYRA_STAAN
41 PsiBlast_CBE 82.1948% -10 - C8 -5IWM 6.1 GYRA_STAAN
43 PsiBlast_CBE 82.0748% -7 - C8 -5IWI 5.1 GYRA_STAAN
44 PsiBlast_CBE 81.9748% -7 - C8 -5IWI 4.3 GYRA_STAAN (first)
40 PsiBlast_CBE 81.5848% -11 - C8 -5NPP Error ?
45 PsiBlast_CBE 81.5148% -10 - C8 -5CDR 5.0 GYRA_STAAN
69 PsiBlast_CBE 81.4943% -26 - C8 -2Y3P 3.3 GYRA_ECOLI (first)
48 PsiBlast_CBE 81.4348% -7 - C8 -5CDP 5.3 GYRA_STAAN
49 PsiBlast_CBE 81.3948% -9 - C8 -4BUL 5.5 GYRA_STAAN
46 PsiBlast_CBE 81.3348% -8 - C8 -5CDR 3.4 GYRA_STAAN
67 PsiBlast_CBE 81.1849% -11 - C8 -5CDN 4.9 GYRA_STAAN (first)
66 PsiBlast_CBE 81.0449% -13 - C8 -5CDN 5.1 GYRA_STAAN (first)
119 HHSearch 80.9849% -9 * C8 *5CDM Error GYRA_STAAN
42 PsiBlast_CBE 80.8148% -7 - C8 -5IWM 5.7 GYRA_STAAN (first)
59 PsiBlast_CBE 80.6648% -9 - C8 -5CDM Error GYRA_STAAN
57 PsiBlast_CBE 80.4848% -13 - C8 -5CDO 4.3 GYRA_STAAN
63 PsiBlast_CBE 80.2749% -12 - C8 -5CDQ 2.6 GYRA_STAAN
52 PsiBlast_CBE 80.1248% -10 - C8 -2XCR 5.0 GYRA_STAAN (first)
123 HHSearch 79.8948% -10 - C8 -2XCR 5.0 GYRA_STAAN (first)
62 PsiBlast_CBE 79.3449% -10 - C8 -5CDQ 3.9 GYRA_STAAN
53 PsiBlast_CBE 79.1948% -9 - C8 -2XCR 5.8 GYRA_STAAN (first)
50 PsiBlast_CBE 78.6448% -10 - C8 -2XCR 3.9 GYRA_STAAN (first)
73 PsiBlast_CBE 78.0643% 18 - C8 -3ILW 1.7 GYRA_MYCTU
72 PsiBlast_CBE 78.0242% 16 - C8 -3IFZ 3.4 GYRA_MYCTU
51 PsiBlast_CBE 78.0048% -8 - C8 -2XCR 4.1 GYRA_STAAN (first)
74 PsiBlast_CBE 77.7643% 19 - C8 -3ILW 2.8 GYRA_MYCTU
71 PsiBlast_CBE 77.1642% 20 - C8 -3IFZ 3.1 GYRA_MYCTU
121 HHSearch 76.9643% 19 - C8 -3ILW 2.8 GYRA_MYCTU
56 PsiBlast_CBE 65.5948% 34 - C8 -5CDO Error GYRA_STAAN
54 PsiBlast_CBE 60.5148% 28 - C8 -5CDO 5.3 GYRA_STAAN
61 PsiBlast_CBE 60.4149% 29 - C8 -5CDQ 5.3 GYRA_STAAN
58 PsiBlast_CBE 60.2448% 34 - C8 -5CDM 6.1 GYRA_STAAN
64 PsiBlast_CBE 59.7349% 31 - C8 -5CDN 3.9 GYRA_STAAN
60 PsiBlast_CBE 59.7349% 31 - C8 -5CDQ 3.8 GYRA_STAAN
55 PsiBlast_CBE 58.3548% 34 - C8 -5CDO 4.8 GYRA_STAAN
65 PsiBlast_CBE 58.0249% 28 - C8 -5CDN 4.6 GYRA_STAAN