@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U1D9: (2017-12-20 )
MINLVKPLLPGSTIGIVGGGQLGRMMAISAKEMGFKVGVLDPVSDCPAAQVADWHIESVYDDTFALKELARRTDVITYEFENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAIDGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDLLREGTCVLEAWIPFEKEISIMVAGNGQGDFTTFPVVENIHHNNILHETIAPAAIDQDVIEEAERIARVIAEAVSLSGVLGVEMFLTKTGGLYVNELAPRPHNSGHYSIEACSMSQFDAHIRGICGWPLGEKVRLISNAVMVNVLGEQLLESYRLIENKPDWQFHFYGKKQAKKGRKMGHITILTEDIQQTLEEIKQTNIWD

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3V4S)
?
[Raw transfer]




ADP_A_3(3V4S)
?
[Raw transfer]




ADP_A_3(3QFF)
?
[Raw transfer]




A12_A_3(4MAM)
?
[Raw transfer]




ADP_A_3(3R5H)
?
[Raw transfer]




A12_A_3(4MAM)
?
[Raw transfer]




ANP_A_2(4MA5)
?
[Raw transfer]




ATP_B_12(4DLK)
?
[Raw transfer]




ATP_B_12(4DLK)
?
[Raw transfer]




ADP_B_4(3QFF)
?
[Raw transfer]




ADP_A_4(3ORQ)
?
[Raw transfer]




ADP_B_6(3R5H)
?
[Raw transfer]




ADP_A_2(5JQW)
?
[Raw transfer]




ADP_A_4(3ORQ)
?
[Raw transfer]




AMP_A_3(3AW8)
?
[Raw transfer]




AMP_A_3(3AW8)
?
[Raw transfer]




AMP_B_5(3AW8)
?
[Raw transfer]




AMP_A_2(4MA0)
?
[Raw transfer]




FMT_A_15(4M9U)
?
[Raw transfer]




ATP_A_7(4DLK)
?
[Raw transfer]




ATP_A_8(4DLK)
?
[Raw transfer]




2 PsiBlast_PDB 89.6049%-115 - C1 -3QFF 7.1 ?
5 PsiBlast_PDB 88.8849%-114 - C1 -4DLK 4.3 ?
4 PsiBlast_PDB 88.4249%-109 - C1 -3V4S 7.9 ?
3 PsiBlast_PDB 88.3449%-112 - C1 -3R5H 7.2 ?
1 PsiBlast_PDB 88.1749%-110 - C1 -3Q2O - ? -
21 PsiBlast_CBE 88.1549%-109 - C1 -3R5H 6.2 ?
24 PsiBlast_CBE 88.0549%-111 - C1 -3V4S 7.9 ?
25 PsiBlast_CBE 87.9749%-111 - C1 -4DLK 7.7 ?
22 PsiBlast_CBE 87.9749%-113 - C1 -3QFF 5.9 ?
59 HHSearch 84.9849% -49 - C1 -3Q2O - ? -
60 HHSearch 84.2349% -46 - C1 -4DLK 5.4 ?
8 PsiBlast_PDB 80.1039% -49 - C1 -4E4T - ? -
61 HHSearch 79.0144% -15 - C1 -3ORQ 4.8 ?
6 PsiBlast_PDB 78.2844% -88 - C1 -3ORQ 4.8 ?
7 PsiBlast_PDB 76.7644% -87 - C1 -3ORR - ? -
63 HHSearch 76.0939% -28 - C1 -4E4T - ? -
62 HHSearch 74.6739% -27 - C1 -4E4T - ? -
72 HHSearch 73.8242% -25 - C1 -3AX6 - ? -
71 HHSearch 73.3942% -25 - C1 -3AX6 - ? -
66 HHSearch 71.1835% -82 - C1 -3AW8 4.6 ?
67 HHSearch 69.2334% -46 - C1 -4MAM 7.0 ?
14 PsiBlast_PDB 66.9534% 7 - C1 -4MAM 7.1 ?
11 PsiBlast_PDB 66.3534% 6 - C1 -5JQW 5.8 ?
13 PsiBlast_PDB 66.0934% 4 - C1 -4MA0 5.4 ?
27 PsiBlast_CBE 65.9936% -11 - C1 -3AW8 5.1 ?
10 PsiBlast_PDB 65.5836% -14 - C1 -3AW8 4.6 ?
12 PsiBlast_PDB 64.2734% 3 - C1 -4MA5 5.5 ?