@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U1P3: (2017-12-21 )
MDLKDYIASIPDYPSKGIVFRDISPLMADGDAYREATKQIVNYAKEKRIDMVVGPEARGFIVGCPVAYELGVGFAPVRKKGKLPRETIEVTYGLEYGTDTLTLHKDAIKPGQRVLICDDLLATGGTIKATIELIEQLGGVVVGCAFLIELMDLHGRDKIKGYDIITLMEY

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_B_5(1ZN8)
APT_HUMAN
[Raw transfer]




AMP_A_4(1ZN8)
APT_HUMAN
[Raw transfer]




AMP_B_3(1ZN9)
APT_HUMAN
[Raw transfer]




AMP_B_7(4M0K)
?
[Raw transfer]




AMP_B_3(1ZN9)
APT_HUMAN
[Raw transfer]




AMP_A_3(1ORE)
APT_HUMAN
[Raw transfer]




AMP_A_5(4M0K)
?
[Raw transfer]




AMP_A_2(5B6H)
?
[Raw transfer]




AMP_B_3(4X45)
APT_HUMAN
[Raw transfer]




AMP_D_11(4M0K)
?
[Raw transfer]




PRP_A_6(1ZN7)
APT_HUMAN
[Raw transfer]




AMP_C_9(4M0K)
?
[Raw transfer]




AMP_D_11(4M0K)
?
[Raw transfer]




AMP_B_7(4M0K)
?
[Raw transfer]




AMP_A_2(5B6H)
?
[Raw transfer]




AMP_B_3(4X45)
APT_HUMAN
[Raw transfer]




AMP_A_2(4X44)
APT_HUMAN
[Raw transfer]




PRP_B_10(1ZN7)
APT_HUMAN
[Raw transfer]




HSX_A_4(5VN4)
?
[Raw transfer]




HSX_B_8(5VN4)
?
[Raw transfer]




9DA_I_9(1L1Q)
?
[Raw transfer]




9DA_A_3(1L1R)
?
[Raw transfer]




ADE_B_12(1ZN7)
APT_HUMAN
[Raw transfer]




ADE_A_8(1ZN7)
APT_HUMAN
[Raw transfer]




CIT_A_4(1QB7)
?
[Raw transfer]




77 HHSearch 79.1153%-172 - C3 -4LZA - APT_THEP3 -
79 HHSearch 77.7155%-150 - C3 -2DY0 - APT_ECOLI -
1 PsiBlast_PDB 76.6452%-170 - C3 -4LZA - APT_THEP3 -
4 PsiBlast_PDB 76.5456%-148 - C3 -2DY0 - APT_ECOLI -
73 HHSearch 75.2152%-158 * C3 *5B6H 7.1 ?
74 HHSearch 74.5051%-160 - C3 -4M0K 5.8 ?
75 HHSearch 74.4751%-162 - C3 -4M0K 5.8 ?
3 PsiBlast_PDB 73.0455%-159 - C3 -5B6H 7.1 ?
2 PsiBlast_PDB 72.7155%-159 - C3 -4MB6 - APT_YERPS -
5 PsiBlast_PDB 72.4652%-161 - C3 -4M0K 5.6 ?
23 PsiBlast_CBE 72.4352%-162 - C3 -4M0K 5.8 ?
21 PsiBlast_CBE 72.4152%-165 - C3 -4M0K 5.8 ?
22 PsiBlast_CBE 72.3352%-160 - C3 -4M0K 5.3 ?
6 PsiBlast_PDB 66.7743% -35 - C3 -1ORE 6.8 APT_HUMAN
10 PsiBlast_PDB 66.6743% -41 - C3 -4X44 6.8 APT_HUMAN
8 PsiBlast_PDB 66.5943% -46 - C3 -1ZN8 7.4 APT_HUMAN
9 PsiBlast_PDB 66.1343% -48 - C3 -1ZN9 - APT_HUMAN -
25 PsiBlast_CBE 66.0843% -52 - C3 -1ZN8 6.8 APT_HUMAN
7 PsiBlast_PDB 65.7243% -44 - C3 -1ZN7 4.9 APT_HUMAN
11 PsiBlast_PDB 65.3743% -49 - C3 -4X45 - APT_HUMAN -
26 PsiBlast_CBE 65.1843% -47 - C3 -1ZN7 4.5 APT_HUMAN
78 HHSearch 64.6244% -40 - C3 -1ZN9 6.7 APT_HUMAN
76 HHSearch 64.3044% -46 - C3 -4X45 6.6 APT_HUMAN
24 PsiBlast_CBE 64.2743% -42 - C3 -1ZN9 6.7 APT_HUMAN
27 PsiBlast_CBE 64.1443% -48 - C3 -4X45 6.6 APT_HUMAN
15 PsiBlast_PDB 60.0840%-111 - C3 -1L1R 3.5 ?
14 PsiBlast_PDB 59.9640%-104 - C3 -1L1Q 3.4 ?