@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U2J5: (2017-12-22 )
MLLMSSKAELLNGMNPRQKEAVLHTDGPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQAKNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKEFQYNQCMDFDDLIMNTIRLFEEHPDSLTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRFRNLCVVGDADQSIYGWRGADMQNILDFEKDYPDAAVILLEQNYRSTKNILSAANQVIENNSNRKPKNLWTENKEGNKITYYRADNERDETRFIVDRMQEEIRSNHRNYGDFAILYRTNAQSRVMEETLLKANIPYKMVGGHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLLEAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNTLEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDASQVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRLAYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSATGGENNSWKPGDKVKHKKWGLGTVVRVSGTSKDLELDVAFPSQGVKRLLAAFAPIEKA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_D_2(2IS6)
UVRD_ECOLI
[Raw transfer]
-
NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
1 PsiBlast_PDB 92.6859% -68 - C2 -3PJR 5.2 ?
2 PsiBlast_PDB 91.0659% -65 - C2 -1QHG - PCRA_GEOSE -
3 PsiBlast_PDB 90.8459% -62 - C2 -1PJR - PCRA_GEOSE -
4 PsiBlast_PDB 88.6862% -94 - C2 -2PJR 12.1 ?
21 PsiBlast_CBE 87.0562% -91 - C2 -2PJR 10.9 ?
6 PsiBlast_PDB 86.9842% -55 - C2 -2IS1 10.1 UVRD_ECOLI
8 PsiBlast_PDB 86.7542% -47 - C2 -2IS6 4.0 UVRD_ECOLI
7 PsiBlast_PDB 85.2942% -54 - C2 -2IS2 - UVRD_ECOLI -
23 PsiBlast_CBE 84.1842% -55 - C2 -2IS1 7.3 UVRD_ECOLI
35 HHSearch 82.5745% -2 - C2 -4C2U - ? -
27 PsiBlast_CBE 82.4144% -3 - C2 -4C2U - ? -
22 PsiBlast_CBE 82.1542% -3 - C2 -4C2T - ? -
9 PsiBlast_PDB 81.9444% -4 - C2 -4C2U - ? -
5 PsiBlast_PDB 81.6242% -5 - C2 -4C2T - ? -
10 PsiBlast_PDB 81.1444% 18 - C2 -4C30 - ? -
25 PsiBlast_CBE 79.9944% 18 - C2 -4C30 - ? -
33 HHSearch 75.2740% 9 - C2 -1UAA - REP_ECOLI -
11 PsiBlast_PDB 75.1740% 16 - C2 -1UAA - REP_ECOLI -
28 PsiBlast_CBE 74.0840% 12 - C2 -1UAA - REP_ECOLI -
36 HHSearch 69.2626% 0 - C- -4CEJ - ADDA_BACSU -
31 PsiBlast_CBE 43.0169%-102 - C2 -2PJR 4.0 ?
32 PsiBlast_CBE 40.6869%-104 - C2 -2PJR 4.3 ?