@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U2S0: (2017-12-23 )
MAIENIGGMNMVTPKYQRVVLKLSGEALAGDAGFGIKPPVIKEIIQEIKEVHELGVEMAIVVGGGNIWRGQIGAQMGMERAQADYMGMLATVMNALALQDTLENVGVPTRVQTSIEMRQIAEPYIRRKAERHLEKGRIVIFAGGTGNPYFSTDTTAALRAAEIGADVILMAKNNVDGVYSADPKVDANAVKFEELTHLEVIAKGLQVMDSTASSLSMDNDIPLLVFNLNEHGNIRRAILGENIGTTVRGK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_B_13(2BND)
PYRH_ECOLI
[Raw transfer]



UDP_A_7(2BND)
PYRH_ECOLI
[Raw transfer]



UTP_A_3(2BNF)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]



GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]



ANP_A_3(2BRI)
PYRH_PYRFU
[Raw transfer]



GOL_B_6(1YBD)
PYRH_NEIMB
[Raw transfer]
1 PsiBlast_PDB 92.0364%-137 - C1 -1Z9D - PYRH_STRP1 -
25 PsiBlast_CBE 89.2952%-143 - C1 -3EK5 - PYRH_XANCP -
3 PsiBlast_PDB 88.6752%-143 - C1 -3EK5 - PYRH_XANCP -
26 PsiBlast_CBE 87.1452%-142 - C1 -3EK5 - PYRH_XANCP -
4 PsiBlast_PDB 86.9952%-143 - C1 -3EK6 - PYRH_XANCP -
27 PsiBlast_CBE 86.7152%-142 - C1 -3EK5 - PYRH_XANCP -
28 PsiBlast_CBE 86.4252%-137 - C1 -3EK5 - PYRH_XANCP -
31 PsiBlast_CBE 86.3046%-143 - C1 -2V4Y - PYRH_ECOLI -
5 PsiBlast_PDB 85.7246%-142 - C1 -2BND 7.7 PYRH_ECOLI
74 Fugue 84.9446%-137 * C1 *2BNE 5.8 PYRH_ECOLI
6 PsiBlast_PDB 84.8846%-143 - C1 -2BNE 5.8 PYRH_ECOLI
7 PsiBlast_PDB 84.8046%-144 - C1 -2V4Y - PYRH_ECOLI -
24 PsiBlast_CBE 84.5252%-145 - C1 -3EK5 - PYRH_XANCP -
62 HHSearch 84.4146%-132 - C1 -2BNE 5.9 PYRH_ECOLI
22 PsiBlast_CBE 84.3557%-166 - C1 -3NWY - PYRH_MYCTU -
33 PsiBlast_CBE 84.0046%-144 - C1 -2V4Y - PYRH_ECOLI -
35 PsiBlast_CBE 83.8946%-134 - C1 -2BNE 5.9 PYRH_ECOLI
29 PsiBlast_CBE 83.7646%-136 - C1 -2BND 7.5 PYRH_ECOLI
12 PsiBlast_PDB 83.1744%-142 - C1 -2BNF 7.9 PYRH_ECOLI
61 HHSearch 83.0766% -53 - C1 -1Z9D - PYRH_STRP1 -
53 HHSearch 75.9152% -62 - C1 -1YBD 3.0 PYRH_NEIMB
9 PsiBlast_PDB 74.5751% -60 - C1 -1YBD 2.9 PYRH_NEIMB
10 PsiBlast_PDB 73.2652% -59 - C1 -4A7W 3.2 PYRH_HELPY
57 HHSearch 72.0950% -62 - C1 -4A7W 2.6 PYRH_HELPY
40 PsiBlast_CBE 71.3752% -62 - C1 -4A7W 2.6 PYRH_HELPY