@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U2V1: (2017-12-23 )
MFISMWAQDKNGLIGKNGLLPWRLPNDMRFFREHTMDRILVMGRKTYEGMGDLSLPYRHIIVLTTQPNFRTKENAEVMHSIDELLSYSQTISEDIYVSGGSRIFQELLPYTGRIWRTLIDSTFEGDTYIGNIDFSDFALIEEYEGITDQENLYAHRFQKWERVKNRVASKEE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MTX_A_2(1AO8)
DYR_LACCA
[Raw transfer]




TMQ_A_2(1BZF)
DYR_LACCA
[Raw transfer]




EKB_B_6(3JWC)
?
[Raw transfer]




EKB_A_4(3JWC)
?
[Raw transfer]




5WA_B_6(3JWF)
?
[Raw transfer]




5WA_A_4(3JWF)
?
[Raw transfer]




5WB_A_4(3JWK)
?
[Raw transfer]




5WB_B_6(3JWK)
?
[Raw transfer]




9DR_A_4(3SAI)
?
[Raw transfer]




52V_B_6(3LG4)
DYR_STAAU
[Raw transfer]




TOP_B_12(2W9S)
DYRA_STAAU
[Raw transfer]




NDP_A_2(3TQ9)
?
[Raw transfer]




TOP_E_19(2W9S)
DYRA_STAAU
[Raw transfer]




NDP_A_2(3TQB)
?
[Raw transfer]




1VO_X_2(4LAH)
DYR_STAAU
[Raw transfer]




GOL_H_8(1ZDR)
?
[Raw transfer]




NAP_A_2(4M7U)
?
[Raw transfer]




NAP_A_3(4M7V)
?
[Raw transfer]




GOL_B_11(5ECC)
?
[Raw transfer]




MTX_B_6(3IX9)
DYR_STRPN
[Raw transfer]




1 PsiBlast_PDB 95.8445%-132 - C6 -4M7U 12.2 ?
2 PsiBlast_PDB 95.5045%-132 - C6 -4M7V 10.6 ?
113 HHSearch 86.0535%-138 - C6 -3TQ8 - ? -
4 PsiBlast_PDB 84.4936%-138 - C6 -3JWC 5.4 ?
84 PsiBlast_CBE 84.0935%-136 - C6 -3JVX - ? -
5 PsiBlast_PDB 83.8436%-135 - C6 -3JWF 4.7 ?
119 HHSearch 83.8234%-132 - C6 -1ZDR - ? -
85 PsiBlast_CBE 83.8234%-137 - C6 -1ZDR 2.4 ?
80 PsiBlast_CBE 83.4835%-132 - C6 -3E0B - ? -
6 PsiBlast_PDB 83.4536%-132 - C6 -3JWK 5.4 ?
23 PsiBlast_CBE 83.0236%-136 - C6 -3JWC 5.7 ?
83 PsiBlast_CBE 82.9435%-133 - C6 -3JVX - ? -
18 PsiBlast_PDB 82.7635%-132 - C6 -3S9U - ? -
19 PsiBlast_PDB 82.4535%-131 - C6 -3SA1 - ? -
24 PsiBlast_CBE 82.4236%-127 - C6 -3JW5 - ? -
79 PsiBlast_CBE 82.3835%-131 - C6 -3E0B - ? -
82 PsiBlast_CBE 82.2135%-131 - C6 -3JWM - ? -
21 PsiBlast_CBE 82.0536%-132 - C6 -3JWK 4.9 ?
114 HHSearch 81.9932%-147 - C6 -3FYV - DYR_STAAU -
75 PsiBlast_CBE 81.9735%-134 - C6 -3SAI 6.8 ?