@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U3P5: (2017-12-25 )
MKERMYMKVKKAVIPAAGLGTRFLPATKAMAKEMLPIVDKPTIQFIVEEALKSGIEDILIVTGKAKRPIEDHFDSNIELETNLSEKGKTELLKLVEETTDVNLHFIRQSHPKGLGHAVLQARAFIGNEPFVVMLGDDIMEDEVPLTQQLIDDYERTHASTIAVMQVPHDETSKYGIINPGEVLEDGLYNVKNFVEKPDPSKAPSDLAIIGRYLLTPEIFDVLSEQQPGAGNEIQLTDAIDTLNKTQRVFARKFTGKRYDVGDKFGFMKTSIEYGLTHPEVGAPLREYILSLGKTLEAEGSKIDHNPKGITEIKEEKKK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UPG_A_5(3JUK)
?
[Raw transfer]



GUD_B_14(2PA4)
?
[Raw transfer]



GUD_D_16(2PA4)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



UPG_C_13(3JUK)
?
[Raw transfer]



UPG_D_17(3JUK)
?
[Raw transfer]



UPG_B_9(3JUK)
?
[Raw transfer]



GUD_D_16(2PA4)
?
[Raw transfer]



GUD_A_13(2PA4)
?
[Raw transfer]



GUD_B_14(2PA4)
?
[Raw transfer]



UPG_A_2(5I1F)
?
[Raw transfer]



GUD_C_15(2PA4)
?
[Raw transfer]



UTP_A_2(5VE7)
?
[Raw transfer]



THM_A_5(5IDT)
?
[Raw transfer]



GOL_A_3(3PNN)
?
[Raw transfer]



CIT_A_2(5VCT)
?
[Raw transfer]
1 PsiBlast_PDB 85.3048% -3 - C1 -5J49 - ? -
5 PsiBlast_PDB 84.0848% -20 - C1 -3JUJ - ? -
21 PsiBlast_CBE 82.3448% 1 - C1 -5J49 - ? -
4 PsiBlast_PDB 81.1147% 4 - C1 -5VE7 6.6 ?
2 PsiBlast_PDB 81.1147% 8 - C1 -5I1F 6.5 ?
23 PsiBlast_CBE 80.6848% -28 - C1 -3JUK 8.2 ?
6 PsiBlast_PDB 80.0748% -26 - C1 -3JUK 7.6 ?
22 PsiBlast_CBE 79.5148% -22 - C1 -3JUK 7.9 ?
3 PsiBlast_PDB 79.4947% 4 - C1 -5VCT 3.7 ?
24 PsiBlast_CBE 79.4848% -24 - C1 -3JUK 7.7 ?
28 PsiBlast_CBE 78.2346% -12 - C1 -2UX8 - ? -
54 HHSearch 78.1946% 5 - C1 -5J49 - ? -
58 HHSearch 77.6946% 8 - C1 -3JUJ - ? -
30 PsiBlast_CBE 77.2746% -12 - C1 -2UX8 - ? -
49 HHSearch 76.7045% -22 - C1 -2UX8 - ? -
26 PsiBlast_CBE 76.6946% -8 - C1 -2UX8 - ? -
27 PsiBlast_CBE 76.4746% -14 - C1 -2UX8 - ? -
29 PsiBlast_CBE 76.3846% -12 - C1 -2UX8 - ? -
31 PsiBlast_CBE 75.5346% -11 - C1 -2UX8 - ? -
57 HHSearch 75.3146% -22 - C1 -3JUK 7.6 ?
7 PsiBlast_PDB 72.6039% -10 - C1 -2PA4 6.2 ?
34 PsiBlast_CBE 72.5839% -11 - C1 -2PA4 4.6 ?
51 HHSearch 72.0639% 0 - C1 -2PA4 6.8 ?
52 HHSearch 71.9939% 1 - C1 -2PA4 5.9 ?
32 PsiBlast_CBE 71.0939% -14 - C1 -2PA4 5.1 ?
33 PsiBlast_CBE 70.8039% -9 - C1 -2PA4 4.6 ?