@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U3S3: (2017-12-25 )
MSNQLPVYIQIHDQLKNEIEQGIWKVGDRLPSERELAVKFNVSRMTLRQAIQNLADEGILERKIGSGTYVAREKVQEKMSGATSFTEIMESQNRVPSSRTISYFLTSPSSSEMEKLNLSKDDTILRMERIRFADDVPICFEVASVPQKLIDGYSKAEITESLYRTLEEKGGKKIGPANQTITAVLASEKIADYLEVKRGDAVLRLRQISYFEDGTPFEYVRTQYVGNRFEFYLEK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_B_17(4U0W)
YVOA_BACSU
[Raw transfer]



EDO_B_24(4U0V)
YVOA_BACSU
[Raw transfer]



EDO_B_19(4U0W)
YVOA_BACSU
[Raw transfer]



NACID_E_5(4U0Y)
YVOA_BACSU
[Raw transfer]
-
NACID_F_6(4U0Y)
YVOA_BACSU
[Raw transfer]
-
NACID_E_5(4U0Y)
YVOA_BACSU
[Raw transfer]
-
4 PsiBlast_PDB 84.6335% -78 - C1 -4U0W - YVOA_BACSU -
3 PsiBlast_PDB 84.6035% -81 - C1 -4U0V - YVOA_BACSU -
31 PsiBlast_CBE 84.4435% -79 - C1 -4U0W 2.8 YVOA_BACSU
32 PsiBlast_CBE 83.1335% -78 - C1 -4U0V 2.5 YVOA_BACSU
2 PsiBlast_PDB 82.9635% -78 - C1 -2WV0 - YVOA_BACSU -
95 HHSearch 81.5934% -35 - C1 -2WV0 - YVOA_BACSU -
30 PsiBlast_CBE 76.7435% -72 * C1 *4WWC - YVOA_BACSU -
103 HHSearch 73.7773% -27 - C1 -3DDV - ? -
93 HHSearch 70.9624% -3 - C1 -3BWG - YYDK_BACSU -
94 HHSearch 70.3924% 4 - C1 -3BWG - YYDK_BACSU -
7 PsiBlast_PDB 69.7625% -9 - C1 -3BWG - YYDK_BACSU -
96 HHSearch 69.6126% -33 - C1 -3F8M - PHNF_MYCS2 -
84 Fugue 69.0925% -48 - C1 -3F8M - PHNF_MYCS2 -
86 Fugue 68.9524% 20 - C1 -3BWG - YYDK_BACSU -
33 PsiBlast_CBE 68.8633% -27 - C1 -4ZS8 - DASR_STRCO -
5 PsiBlast_PDB 67.9233% -21 - C1 -4ZS8 - DASR_STRCO -
8 PsiBlast_PDB 66.8426% 61 - C1 -3F8M - PHNF_MYCS2 -
104 HHSearch 65.9873% -64 - C1 -3DDV - ? -
1 PsiBlast_PDB 65.9873% -64 - C1 -3DDV - ? -
100 HHSearch 60.5117% -55 - C1 -3EDP - ? -
34 PsiBlast_CBE 45.5050%-139 - C1 -4U0Y 4.0 YVOA_BACSU
35 PsiBlast_CBE 44.8950%-145 - C1 -4U0Y 3.6 YVOA_BACSU
36 PsiBlast_CBE 44.6350%-149 - C1 -4U0Y 4.2 YVOA_BACSU