@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U475: (2017-12-26 )
MKISPALESTLDNRYNRKEFQKRGFLMIYFDNSATTPIFPQSLDAYVKTSQRIIGNPSSLHDLGNQANRLLQQARKQIADLIHVEPEEIYFTSGGTEGDNWVLKGTMIEKREYGNHMIISGVEHPAVSETAEQLKELGIEVSIAPVDKRGFVRVDELKELIRKETVLVSVMAVNNEVGSIQPIQEISDLLDDFPKIHFHVDAVQAIGKVPFSQWLTERVDFATFSAHKFHGPRGTGFIYWKKGRRLAPLLTGGGQERNQRSGTENVPGIVAMVKALRLSLEIKEQKPEQTQRLKVALINALKTYEKVTIFSEGTDYAPHILCFALKGIRGEVLVHALEEKQIFVSTTSACSSRKHMASSTLHAMHVPNDLATSAVRISLDENNSLAEVEQFMIIFKQLYKKFSAIN

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CYS_F_6(1ECX)
?
[Raw transfer]



ALA_A_4(5B87)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



PLP_B_4(3VAX)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]



GOL_B_13(5FT6)
CSDA_ECOLI
[Raw transfer]



PLP_A_5(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



IPA_A_4(5B7U)
?
[Raw transfer]



PLP_B_8(3A9Y)
SCLY_RAT
[Raw transfer]



ALA_A_3(5J8Q)
SUFS_BACSU
[Raw transfer]



CSS_F_6(1ELU)
?
[Raw transfer]
6 PsiBlast_PDB 89.5035% 0 - C- -5KZ5 - NFS1_HUMAN -
64 Fugue 89.0439% -46 * C1 *1ECX 3.7 ?
42 HHSearch 85.8339% -20 - C1 -1ECX 3.9 ?
41 HHSearch 85.7539% -21 - C1 -1EG5 3.6 ?
9 PsiBlast_PDB 81.5831% -42 - C1 -4EB7 - ISCS2_ARCFU -
21 PsiBlast_CBE 81.2941% -11 - C1 -1ECX 3.9 ?
1 PsiBlast_PDB 81.2141% -12 - C1 -1ECX 3.9 ?
65 Fugue 80.7833% -2 - C1 -4ISY - ISCSL_MYCTU -
10 PsiBlast_PDB 80.4431% -38 - C1 -4HVK - ISCS2_ARCFU -
2 PsiBlast_PDB 80.3040% -11 - C1 -1EG5 3.6 ?
23 PsiBlast_CBE 79.9035% -69 - C1 -5USR - ? -
7 PsiBlast_PDB 79.4932% -38 - C1 -4R5F - ISCS2_ARCFU -
24 PsiBlast_CBE 78.5431% -42 - C1 -4EB7 - ISCS2_ARCFU -
25 PsiBlast_CBE 78.3231% -44 - C1 -4EB5 - ISCS2_ARCFU -
44 HHSearch 77.4632% -2 - C1 -4ISY - ISCSL_MYCTU -
8 PsiBlast_PDB 77.1231% -38 - C1 -4EB5 - ISCS2_ARCFU -
39 HHSearch 76.0732% -1 - C1 -4HVK - ISCS2_ARCFU -
40 HHSearch 73.4932% 3 - C1 -4EB5 - ISCS2_ARCFU -
27 PsiBlast_CBE 73.0933% -16 - C1 -4ISY - ISCSL_MYCTU -
33 PsiBlast_CBE 72.6932% 7 - C1 -3GZC - SCLY_HUMAN -
31 PsiBlast_CBE 71.7432% 15 - C1 -3A9Y 3.2 SCLY_RAT
14 PsiBlast_PDB 71.5432% 7 - C1 -3A9Z 4.0 SCLY_RAT
32 PsiBlast_CBE 71.3632% 9 - C1 -3A9X 3.7 SCLY_RAT
4 PsiBlast_PDB 71.2338% 24 - C1 -3LVK 3.5 ISCS_ECO57
43 HHSearch 70.7732% -2 - C1 -3VAX 3.8 ?
3 PsiBlast_PDB 70.7238% 26 - C1 -3LVJ 4.1 ISCS_ECO57
13 PsiBlast_PDB 70.3732% 11 - C1 -3A9X 4.4 SCLY_RAT
30 PsiBlast_CBE 69.8532% 18 - C1 -3A9Z 3.9 SCLY_RAT
22 PsiBlast_CBE 69.7638% 24 - C1 -3LVJ 3.9 ISCS_ECO57
12 PsiBlast_PDB 69.0234% -9 - C1 -3VAX 3.8 ?
29 PsiBlast_CBE 68.6134% -9 - C1 -3VAX 3.8 ?