@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U4D2: (2017-12-26 )
MIQLLRYAKDYRKQIILGPFFKFLEAVFELVLPLMMASLIDNGLKMNDRGKIIEMGLWMVAMSVIGLICAIICQYYASVASQGFGTELRNQLIKKINTFSHNELNHFGTDTLITRMTNDINQLQLALAMVIRLLIRAPFLSIGSVVMAFVIDWEVGLFFLALLPIFSIILFFIIKKTVPLYQKVQEKLDQLNEHVSQNLSGVRVIRAFAQTKKETEKFDKSTNDLANNYLRVSNISALLSPATTLIMNVGIICLLTVGGIKVNIGSLQQGQVLALINYMNQMLLALIVVSNLVVIFTRAEASGNRVKEVLDTENSILEAEVSTTPDFSSEAIIAFDHVDFRYTPDSGLSLQNITFQLKRNTVLGIIGPTGSGKTTLTQLIPRFYDVSSGTVIMDGMDVRSWQLDHLRQQIALVPQTSVLFTGTIRENLQWGKKDATEKECWEALKIAQAEEFVRQLPNGLDTKVMENGKNFSGGQKQRLTIARALIAKPALLILDDSLSALDYQTDLDLRKALQTYLGSTVIIISQRVRSIQEAHHILVMDQGKIAAQGTHEELLAQSAEYQEIVASQEEE

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_3(4Q4A)
?
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ANP_A_3(3QF4)
?
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ADP_A_2(5DGX)

[Raw transfer]




ADP_A_5(5L22)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_3(5L22)
?
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




100 HHSearch 83.7140% - - C2 -4Q4H - ? -
3 PsiBlast_PDB 82.2339% - - C2 -4Q4H - ? -
1 PsiBlast_PDB 82.0539% -60 - C2 -3QF4 6.6 ?
2 PsiBlast_PDB 81.1639% -59 - C2 -4Q4A 5.9 ?
4 PsiBlast_PDB 79.9940% -51 - C2 -4Q4J - ? -
22 PsiBlast_CBE 68.8431%-125 - C2 -3QF4 - Y288_THEMA -
21 PsiBlast_CBE 68.4331%-126 - C2 -4Q4A - Y288_THEMA -
99 HHSearch 67.2525% -61 - C2 -5MKK - ? -
109 HHSearch 66.4628% -44 - C2 -5MKK - ? -
104 HHSearch 65.6329% -57 - C2 -3QF4 - Y288_THEMA -
103 HHSearch 64.7129% - - C2 -4Q4H - Y288_THEMA -
94 HHSearch 63.9428% -33 - C2 -4AYX - ABCBA_HUMAN -
15 PsiBlast_PDB 62.0527% -25 - C2 -4AYX - ABCBA_HUMAN -
113 Fugue 61.6627% -35 - C2 -3B60 - MSBA_SALTY -
11 PsiBlast_PDB 61.6327% - - C2 -3B5W - MSBA_ECOLI -
93 HHSearch 61.4628% -38 - C2 -4AYT - ABCBA_HUMAN -
98 HHSearch 61.2227% -30 - C2 -4A82 - Y1866_STAAM -
9 PsiBlast_PDB 61.0528% - - C2 -3B5Z 2.3 MSBA_SALTY
8 PsiBlast_PDB 61.0528% - - C2 -3B5Y - MSBA_SALTY -
17 PsiBlast_PDB 59.7327% -24 - C2 -4AYW - ABCBA_HUMAN -
27 PsiBlast_CBE 48.9041%-125 - C2 -2FGJ 5.9
35 PsiBlast_CBE 48.7141%-130 - C2 -1XEF 5.7 HLYBP_ECOLX
28 PsiBlast_CBE 48.6841%-124 - C2 -2FGJ 6.5 HLYBP_ECOLX
37 PsiBlast_CBE 47.9941%-125 - C2 -2FGK 6.8
40 PsiBlast_CBE 47.8641%-119 - C2 -2FGK 6.5 HLYBP_ECOLX
30 PsiBlast_CBE 47.5641%-125 - C2 -2FGJ 6.4 HLYBP_ECOLX
39 PsiBlast_CBE 47.4841%-125 - C2 -2FGK 6.5 HLYBP_ECOLX
38 PsiBlast_CBE 47.1041%-119 - C2 -2FGK 5.9 HLYBP_ECOLX
36 PsiBlast_CBE 46.8541%-134 - C2 -3B5J 6.6
26 PsiBlast_CBE 46.6941%-134 - C2 -2PMK 6.6
31 PsiBlast_CBE 45.6041%-128 - C2 -2FFA 6.2
24 PsiBlast_CBE 44.8241%-128 - C2 -2FF7 6.3
49 PsiBlast_CBE 42.0538%-117 - C2 -5DGX 4.6
79 PsiBlast_CBE 32.3535% -42 - C2 -5L22 5.0 ?
80 PsiBlast_CBE 30.6035% -41 - C2 -5L22 2.6 ?
87 PsiBlast_CBE 27.7331% 4 - C2 -4U00 4.4 ?
90 PsiBlast_CBE 27.4231% -15 - C2 -4YMU 4.8 ?
91 PsiBlast_CBE 27.3731% -17 - C2 -4YMU 4.5 ?
89 PsiBlast_CBE 26.5631% -20 - C2 -4YMV 4.2 ?