@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U4H4: (2017-12-27 )
MVDYKTFDPDLWAAIAKEEERQEHNLELIASENFVSEAVMAAQGSILTNKYAEGYPGHRYYGGCEFVDIVENLAIDRAKELFGAKFANVQPHSGSQANTAAYLALVEPGDTILGMDLSAGGHLTHGSPVNFSGKTYHFVAYGVDPTTEVIDYNVVRILARKHQPKLIVAGASAYGRTIDFAKFREIADEVGAKLMVDMAHIAGLVAAGLHPNPVPYADITTTTTHKTLRGPRGGMILTNDEALAKKINSAVFPGIQGGPLEHVIAGKAVAFKEALDPAFKEYSEQIIANAKAMVKVFNQAIGTRVISGATDNHLMLIDVRELGINGKEAESILDSVNITVNKNSIPFETLSPFKTSGIRIGTPAITTRGFKEEDAVKVAELVVKALQAKDDNAQLDEVKTGVRELTEKFPLHKK

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]



2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]



2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]



FON_H_8(1KL2)
?
[Raw transfer]



ALO_A_3(2W7G)
?
[Raw transfer]



GLY_A_2(2VMQ)
?
[Raw transfer]



GLY_A_2(2VMO)
?
[Raw transfer]



PLG_A_4(1RVY)
GLYC_RABIT
[Raw transfer]



ALO_A_3(2VMX)
?
[Raw transfer]



PLP_C_3(1YJS)
?
[Raw transfer]



GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]



GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]



GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]



PLP_A_3(2W7K)
?
[Raw transfer]



PLP_A_3(2VIB)
?
[Raw transfer]



PLP_A_3(2VMT)
?
[Raw transfer]



PLP_A_2(2W7G)
?
[Raw transfer]



PLP_A_3(2VGV)
?
[Raw transfer]



PLP_A_3(2VMO)
?
[Raw transfer]



PLP_A_3(2W7M)
?
[Raw transfer]



PLP_A_3(2VGU)
?
[Raw transfer]



PLP_A_2(2W7L)
?
[Raw transfer]



PLP_A_3(2W7E)
?
[Raw transfer]



PLP_A_3(2W7H)
?
[Raw transfer]



PLP_A_3(2W7F)
?
[Raw transfer]



PLP_A_3(2VGT)
?
[Raw transfer]



PLP_C_3(1YJZ)
?
[Raw transfer]



PLP_A_3(2VIA)
?
[Raw transfer]



PLP_A_3(2VMP)
?
[Raw transfer]



PLP_A_3(2W7J)
?
[Raw transfer]



PLP_C_3(1KL1)
?
[Raw transfer]



PLP_A_3(2VMW)
?
[Raw transfer]



PLP_A_3(2VMS)
?
[Raw transfer]



PLP_A_3(2VGW)
?
[Raw transfer]



PLP_A_3(2VI9)
?
[Raw transfer]



PLP_A_3(2VMQ)
?
[Raw transfer]



PLP_A_3(2VMU)
?
[Raw transfer]



PLP_A_2(2VMX)
?
[Raw transfer]



PLP_A_2(2VGS)
?
[Raw transfer]



PLP_A_2(2VMV)
?
[Raw transfer]



PLP_A_2(2VMR)
?
[Raw transfer]



PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]



PLP_A_2(2VI8)
?
[Raw transfer]



PLP_C_3(1KKP)
?
[Raw transfer]



PLP_A_2(2W7I)
?
[Raw transfer]



PLP_A_9(1RV4)
GLYC_RABIT
[Raw transfer]



PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]



PLP_B_5(1RVY)
GLYC_RABIT
[Raw transfer]



PLP_B_4(1CJ0)
GLYC_RABIT
[Raw transfer]



PLP_A_2(2VMN)
?
[Raw transfer]



PLP_A_2(2VI8)
?
[Raw transfer]



PLP_A_3(1KKJ)
?
[Raw transfer]



PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]



PLP_A_2(2W7D)
?
[Raw transfer]



PLP_A_3(2VMZ)
?
[Raw transfer]



PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]



PLP_A_2(2VMN)
?
[Raw transfer]



PLP_B_9(1RVU)
GLYC_RABIT
[Raw transfer]



PLP_B_7(1RV3)
GLYC_RABIT
[Raw transfer]



PLP_B_7(1RV3)
GLYC_RABIT
[Raw transfer]



PLP_B_11(1RV4)
GLYC_RABIT
[Raw transfer]



PLP_A_7(1RVU)
GLYC_RABIT
[Raw transfer]



PLP_A_3(1CJ0)
GLYC_RABIT
[Raw transfer]



PLP_C_3(1YJY)
?
[Raw transfer]



PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]



PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]



FON_G_7(1KL2)
?
[Raw transfer]



FFO_B_8(2VMY)
?
[Raw transfer]



FFO_A_6(2VMY)
?
[Raw transfer]



PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]
47 PsiBlast_CBE 94.8965% -84 - C1 -2VMT 4.6 ?
37 PsiBlast_CBE 94.6765% -85 - C1 -2VMQ 4.3 ?
38 PsiBlast_CBE 94.5965% -86 - C1 -2VMP 4.3 ?
11 PsiBlast_PDB 94.4965% -86 - C1 -2VI8 4.4 ?
49 PsiBlast_CBE 94.4765% -85 - C1 -2VMR 4.4 ?
41 PsiBlast_CBE 94.3865% -84 - C1 -2W7M 4.3 ?
36 PsiBlast_CBE 94.2565% -87 - C1 -2W7D 4.5 ?
39 PsiBlast_CBE 94.2365% -84 - C1 -2VMO 3.7 ?
50 PsiBlast_CBE 94.2265% -86 - C1 -2VMZ 3.0 ?
53 PsiBlast_CBE 94.1265% -84 - C1 -2VMX 4.1 ?
13 PsiBlast_PDB 94.1165% -82 - C1 -2VIA 4.0 ?
15 PsiBlast_PDB 94.0265% -84 - C1 -2VGS 4.3 ?
44 PsiBlast_CBE 93.9865% -83 - C1 -2W7J 4.3 ?
35 PsiBlast_CBE 93.9465% -83 - C1 -2W7E 4.3 ?
55 PsiBlast_CBE 93.8565% -85 - C1 -2VMV 4.3 ?
54 PsiBlast_CBE 93.8365% -82 - C1 -2VMW 4.3 ?
12 PsiBlast_PDB 93.8265% -84 - C1 -2VIB 3.7 ?
19 PsiBlast_PDB 93.8165% -84 - C1 -2VGU 4.3 ?
32 PsiBlast_CBE 93.8065% -85 - C1 -2W7H 3.2 ?
34 PsiBlast_CBE 93.7365% -83 - C1 -2W7F 3.3 ?
46 PsiBlast_CBE 93.7165% -84 - C1 -2VMU 3.1 ?
16 PsiBlast_PDB 93.6765% -85 - C1 -2VGT 4.0 ?
40 PsiBlast_CBE 93.4765% -84 - C1 -2VMN 4.5 ?
48 PsiBlast_CBE 93.4565% -84 - C1 -2VMS 3.1 ?
14 PsiBlast_PDB 93.4465% -84 - C1 -2VI9 3.9 ?
7 PsiBlast_PDB 93.3665% -84 - C1 -1KL1 4.5 ?
17 PsiBlast_PDB 93.3165% -85 - C1 -2VGV 4.3 ?
10 PsiBlast_PDB 93.2565% -84 - C1 -1YJS 4.4 ?
33 PsiBlast_CBE 93.1765% -82 - C1 -2W7G 3.4 ?
42 PsiBlast_CBE 93.1065% -85 - C1 -2W7L 4.4 ?
18 PsiBlast_PDB 93.0665% -83 - C1 -2VGW 4.1 ?
45 PsiBlast_CBE 93.0265% -83 - C1 -2W7I 4.4 ?
21 PsiBlast_CBE 92.8568% -72 - C1 -4WXG 6.5 GLYA_STRT1
51 PsiBlast_CBE 92.8265% -82 - C1 -2VMY 4.1 ?
31 PsiBlast_CBE 92.7265% -87 - C1 -1YJZ 3.8 ?
6 PsiBlast_PDB 92.7165% -81 - C1 -1KKP 4.4 ?
20 PsiBlast_PDB 92.6565% -86 - C1 -1YJY 4.1 ?
22 PsiBlast_CBE 92.3768% -71 - C1 -4WXF 5.4 GLYA_STRT1
43 PsiBlast_CBE 92.2865% -83 - C1 -2W7K 4.1 ?
5 PsiBlast_PDB 92.0265% -83 - C1 -1KKJ 3.2 ?
52 PsiBlast_CBE 91.9365% -84 - C1 -2VMY 4.2 ?
29 PsiBlast_CBE 91.5665% -82 - C1 -1KL2 5.0 ?
8 PsiBlast_PDB 91.0365% -82 - C1 -1KL2 4.1 ?
121 HHSearch 90.9765% -77 - C1 -2DKJ 3.1 GLYA_THET8
9 PsiBlast_PDB 89.5065% -76 - C1 -2DKJ 3.2 GLYA_THET8
30 PsiBlast_CBE 88.8665% -77 - C1 -2DKJ 3.1 GLYA_THET8
118 HHSearch 77.3263% 1 * C1 *2VMN 4.5 ?
62 PsiBlast_CBE 77.1161% -15 - C1 -3G8M 4.3 GLYA_ECOLI
116 HHSearch 77.0562% -1 - C1 -2VI8 4.4 ?
112 HHSearch 75.7467% 18 - C1 -4WXG 6.5 GLYA_STRT1
105 HHSearch 69.3147% -11 - C1 -1RV3 3.7 GLYC_RABIT
97 PsiBlast_CBE 67.4746% -12 - C1 -1BJ4 2.7 GLYC_HUMAN
92 PsiBlast_CBE 67.4645% -18 - C1 -1RVU 2.5 GLYC_RABIT
90 PsiBlast_CBE 67.2045% -18 - C1 -1RVY 2.8 GLYC_RABIT
91 PsiBlast_CBE 66.8645% -9 - C1 -1RVU 3.2 GLYC_RABIT
89 PsiBlast_CBE 66.5445% -10 - C1 -1RVY 3.5 GLYC_RABIT
87 PsiBlast_CBE 66.1145% -9 - C1 -1CJ0 4.7 GLYC_RABIT
96 PsiBlast_CBE 65.5645% -17 - C1 -1RV3 2.8 GLYC_RABIT
94 PsiBlast_CBE 65.5145% -17 - C1 -1RV4 3.5 GLYC_RABIT
83 PsiBlast_CBE 64.8446% -22 - C1 -4PVF 2.3 GLYM_HUMAN
101 HHSearch 64.8147% 10 - C1 -4PVF 2.3 GLYM_HUMAN
93 PsiBlast_CBE 64.6945% -9 - C1 -1RV4 3.8 GLYC_RABIT
95 PsiBlast_CBE 64.6345% -10 - C1 -1RV3 3.7 GLYC_RABIT
88 PsiBlast_CBE 64.1145% -6 - C1 -1CJ0 4.2 GLYC_RABIT
82 PsiBlast_CBE 62.7246% -21 - C1 -4PVF 2.6 GLYM_HUMAN
126 Fugue 61.8746% 16 - C1 -1BJ4 2.7 GLYC_HUMAN