@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U4M3: (2017-12-27 )
MRKFVMMKTLYNNPIVRQRADPWVYKHTDGYYYFTGSVPGYQVIELRRAKSLNELEHAASLIVWQAHEEGPMSELIWAPEVHYINGKWYIYFAASNHKTIRDESHHHRMFVLENQHIDPMNTDWIEKGQIKTKRETFSLDGTTFSSQGKLYYVWAQQDPEITGNSNLYLSEMDNPWTLKGKQILLSIPEYEWEKRGFSVNEGPAVLTRNGKIFITYSGSATDENYAMGLLWADEHKNLLLKESWHKLSEPVFVSSEKNKQFGPGHNSFTVSEDGCFDILIYHARPEKNQKGDPLDNPNRHANAQCFTWNEQGFPEFGEPVPYAL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_A_5(3AKH)
IABF_STRAW
[Raw transfer]
-
TRS_A_12(3K1U)
?
[Raw transfer]



AHR_A_4(3AKH)
IABF_STRAW
[Raw transfer]



SUGAR_A_5(3AKH)
IABF_STRAW
[Raw transfer]
-
GOL_B_9(5M8E)
?
[Raw transfer]



AH8_A_4(3AKI)
IABF_STRAW
[Raw transfer]



GOL_B_9(5M8E)
?
[Raw transfer]



AH8_A_4(3AKI)
IABF_STRAW
[Raw transfer]



GOL_A_4(3AKF)
IABF_STRAW
[Raw transfer]



AHR_A_4(3AKG)
IABF_STRAW
[Raw transfer]



PG4_B_10(5M8B)
?
[Raw transfer]



PG4_B_10(5M8B)
?
[Raw transfer]



PGE_A_5(5M8B)
?
[Raw transfer]



IMD_A_4(5M8E)
?
[Raw transfer]
3 PsiBlast_PDB 91.8559% -63 - C1 -3K1U 2.3 ?
6 PsiBlast_PDB 90.2649% -70 - C1 -3AKH 3.2 IABF_STRAW
5 PsiBlast_PDB 88.9549% -70 - C1 -3AKG 3.0 IABF_STRAW
4 PsiBlast_PDB 88.2949% -70 - C1 -3AKF 2.6 IABF_STRAW
7 PsiBlast_PDB 87.4549% -69 - C1 -3AKI 3.0 IABF_STRAW
1 PsiBlast_PDB 84.8057% 27 - C1 -5M8E 2.3 ?
36 HHSearch 83.3959% 20 - C1 -5M8B 2.7 ?
21 PsiBlast_CBE 83.3757% 26 - C1 -5M8E 3.0 ?
2 PsiBlast_PDB 82.9559% 25 - C1 -5M8B 2.7 ?
22 PsiBlast_CBE 82.9359% 25 - C1 -5M8B 2.7 ?
37 HHSearch 79.7457% 34 - C1 -5M8E 3.0 ?
35 HHSearch 75.5448% 8 - C1 -3AKH 2.9 IABF_STRAW
34 HHSearch 73.6348% 9 - C1 -3AKI 2.9 IABF_STRAW
39 HHSearch 53.0326% 25 - C1 -4QQS - ? -
38 HHSearch 51.9226% 26 * C1 *4QQS - ? -
8 PsiBlast_PDB 49.6627% 37 - C1 -4QQS - ? -
53 HHSearch 44.1617% 20 - C1 -1GYH - ARBA_CELJU -
24 Fugue 43.7217% 27 - C1 -1GYH - ARBA_CELJU -
44 HHSearch 43.5717% 16 - C1 -5A8C - ? -
45 HHSearch 42.8917% 15 - C1 -5A8D - ? -