@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U4R9: (2017-12-27 )
MDALCLQFFYEKGVIMSILTLNNITQQFGDKILYEGVDLQLNAGEHLGLIGQNGAGKSTLIKIITGEILPDDGQIHWQKNIHKGYLDQYVEVDETLTIEEFLKTAYAKEYEKEEKIAFLYQTYSETFDDSLLEKAGKLQTELDQGVFYQIDTLVAEMSSGLGIDVLGLDSLLKNLSGGQRSKVILAKLLLENPDVLILDEPTNHLDDQHIQWLTQFLQDFDGAYIVISHDQEFLDQITTHIADIEFGKITKYTGHLKQALKQKEQNRESYLRQYHAQQKQIEKTEAYIRKYKAGSRSTMAKSRQKQLDKIERLTPPASASKAVFDFPFSPIVTTLAVETTDLVIGYDRPLLAPINLTIRFGENIAIRGFNGIGKSTLLKTLIGEIEKISGDFHFPDNTKINYFSQDLYWENPLETPLQYLSSQFPKATIKELRRQLAKAGLVNQLASEPLTTLSGGEQTKVKLAQLTMNQGNLLILDEPTNHIDQETKESLQDGIQKFPGTVIIVSHEQEFYQDLVQRVIEIEPK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_P_3(4CRM)
RLI1_YEAST
[Raw transfer]




ADP_A_5(1YQT)
?
[Raw transfer]




ADP_B_11(3OZX)
?
[Raw transfer]




2 PsiBlast_PDB 73.4428% 24 - C1 -4FIN - ETTA_ECOLI -
1 PsiBlast_PDB 72.2028% 41 - C1 -3J5S - ETTA_ECOLI -
21 HHSearch 70.2528% 37 - C1 -3J5S - ETTA_ECOLI -
32 HHSearch 68.6328% 13 - C1 -2IW3 - EF3A_YEAST -
36 HHSearch 64.0228% 32 - C1 -2IX8 - -
9 PsiBlast_PDB 53.7026% -79 - C1 -2IT1 - ? -
3 PsiBlast_PDB 52.9826% -25 - C1 -2IWH - EF3A_YEAST -
5 PsiBlast_PDB 52.9326% -21 - C1 -2IW3 - EF3A_YEAST -
4 PsiBlast_PDB 52.6426% -24 - C1 -2IX3 - EF3A_YEAST -
17 PsiBlast_PDB 52.4525% -81 - C1 -2YYZ - ? -
46 HHSearch 52.2826% -31 - C1 -3FVQ - FBPC_NEIG1 -
7 PsiBlast_PDB 50.7624% 28 - C1 -3OZX - ? -
10 PsiBlast_PDB 50.0324% 39 - C1 -1YQT 4.8 ?
37 HHSearch 49.7220% 25 - C1 -4CRM 2.9 RLI1_YEAST
47 HHSearch 49.5825% -29 - C1 -4YER - ? -
53 Fugue 49.5117% 31 - C1 -3J16 - RLI1_YEAST -
15 PsiBlast_PDB 49.1123% 35 - C1 -5LW7 - ? -
6 PsiBlast_PDB 49.0126% -11 - C1 -2IX8 - -
14 PsiBlast_PDB 48.8923% 35 - C1 -3J15 - ? -
44 HHSearch 48.7124% -28 * C1 *3RLF - MALK_ECOLI -