@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U4U1: (2017-12-27 )
MMIIEIDKLVKRYGDFVALNHFDLQVQEGEVLGLLGPNGSGKSTAINCMLSLLNYDKGTIKLFGTTMTPENYAVKAMIGVVPQDVAVFDELSVQENIDYFCGLYVSEKEKRKALIEEVIQLVGLEKYVSFRPGELSGGLKRRLNIACGIAHKPRLIFLDEPTVAVDPQSRNKILESIKELNRQGATIVYTTHYMEEVEILCDQIVIMDQGQVIAKGTKESLKDMVRTADRLTIDIPLLPENVLSAIQRTIASDGIAYKKGQLQVTTTELNTVLLPILTILQEEKISYGKIATKEASLNDVFLEITGKDLRD

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(4YMU)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



ACP_A_4(5X40)
CBIO_RHOCB
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ACP_B_6(5X40)
CBIO_RHOCB
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



GOL_A_5(4P33)
LPTB_ECOLI
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]
68 HHSearch 79.9934% -90 - C1 -4YER 6.5 ?
1 PsiBlast_PDB 79.6032% -88 - C1 -4YER 6.5 ?
2 PsiBlast_PDB 64.3429%-137 - C1 -1VPL - ? -
58 PsiBlast_CBE 60.3331% -58 - C1 -3FVQ - FBPC_NEIG1 -
59 PsiBlast_CBE 58.4331% -55 - C1 -3FVQ - FBPC_NEIG1 -
6 PsiBlast_PDB 57.6432% -21 - C1 -2OUK - ? -
28 PsiBlast_CBE 57.1632% -20 - C1 -2OLK 6.2 ?
29 PsiBlast_CBE 57.0532% -14 - C1 -2OLK 6.5 ?
72 HHSearch 56.9330% -58 - C1 -3FVQ - FBPC_NEIG1 -
5 PsiBlast_PDB 56.5432% -15 - C1 -2OLK - ? -
87 HHSearch 56.5127%-149 - C1 -4RVC - ? -
4 PsiBlast_PDB 55.9932% -18 - C1 -2OLJ - ? -
71 HHSearch 55.9728%-126 - C1 -2AWN - MALK_ECOLI -
10 PsiBlast_PDB 55.7032% -21 - C1 -4U02 - ? -
22 PsiBlast_CBE 54.9232% -15 - C1 -3C4J 5.5 ?
27 PsiBlast_CBE 54.6832% -15 - C1 -2OLK - ? -
9 PsiBlast_PDB 53.6332% -14 - C1 -4U00 6.5 ?
30 PsiBlast_CBE 53.0332% -17 - C1 -2OLJ - ? -
21 PsiBlast_CBE 52.9832% -16 - C1 -3C41 5.7 ?
70 HHSearch 52.6728%-129 - C1 -3RLF - MALK_ECOLI -
38 PsiBlast_CBE 46.3233% -35 - C1 -4MKI 2.2 ECFA2_CALS4