@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U5D9: (2017-12-29 )
MKKSGTTRKASFDKETYLKGASFLYKKMISYIKFLRKEWKVMSWFTRAIDAAKRNDPAARSTAEIVLTYPGFHALFWHRFSHFLYQHRLFLLAKINAQFWRFLTGVEIHPGATIGTGVFIDHGMGIVIGETAEIEDDVILFHGVTLGGTGKETGKRHPTVKQGAMLSANAQILGPVTIGKNAKIGAGAVVLKDVPDDATAVGVPAKVVRIKGEKVRRSE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CYS_B_8(4H7O)
?
[Raw transfer]




CYS_B_8(4H7O)
?
[Raw transfer]




CYS_B_4(1T3D)
CYSE_ECOLI
[Raw transfer]




SER_A_3(4N69)
?
[Raw transfer]




SER_B_5(4N69)
?
[Raw transfer]




CYS_A_6(4H7O)
?
[Raw transfer]




SER_B_5(4N69)
?
[Raw transfer]




COA_I_9(1SST)
CYSE_HAEIN
[Raw transfer]




COA_G_7(1SST)
CYSE_HAEIN
[Raw transfer]




COA_K_11(1SST)
CYSE_HAEIN
[Raw transfer]




COA_G_7(1SST)
CYSE_HAEIN
[Raw transfer]




COA_I_9(1SST)
CYSE_HAEIN
[Raw transfer]




10 PsiBlast_PDB 78.7839% -53 - C2 -4N69 3.5 ?
11 PsiBlast_PDB 77.6039% -49 - C2 -4N6A - ? -
55 PsiBlast_CBE 77.2339% -52 - C2 -4N69 3.5 ?
140 HHSearch 76.6945%-123 - C2 -1SSQ - CYSE_HAEIN -
129 Fugue 76.3238% -21 - C2 -1SSQ - CYSE_HAEIN -
53 PsiBlast_CBE 75.0839% -51 - C2 -4N6B - ? -
50 PsiBlast_CBE 74.5639% -51 - C2 -4N6B - ? -
52 PsiBlast_CBE 73.7339% -51 - C2 -4N6B - ? -
143 HHSearch 73.6744%-133 - C2 -4N69 3.5 ?
138 HHSearch 73.6142%-121 - C2 -4H7O 2.7 ?
49 PsiBlast_CBE 73.4939% -55 - C2 -4N6B - ? -
144 HHSearch 73.4144%-140 - C2 -4N6A - ? -
47 PsiBlast_CBE 73.2145%-130 - C2 -4H7O 2.7 ?
48 PsiBlast_CBE 73.1445%-127 - C2 -4H7O 2.9 ?
8 PsiBlast_PDB 72.9545%-127 - C2 -4H7O - ? -
139 HHSearch 72.4947%-124 - C2 -3GVD - ? -
51 PsiBlast_CBE 70.6339% -56 - C2 -4N6B - ? -
28 PsiBlast_CBE 69.5245% -28 - C2 -3GVD - ? -
12 PsiBlast_PDB 69.4639% -54 - C2 -4N6B - ? -
1 PsiBlast_PDB 68.8745% -27 - C2 -3GVD - ? -
33 PsiBlast_CBE 62.0649% -24 - C2 -1SST 4.6 CYSE_HAEIN
34 PsiBlast_CBE 61.8749% -27 - C2 -1SST 4.1 CYSE_HAEIN
3 PsiBlast_PDB 61.6149% -40 - C2 -1SST 5.6 CYSE_HAEIN
9 PsiBlast_PDB 60.7745% -17 - C2 -1T3D 3.5 CYSE_ECOLI