@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XWL6: (2017-12-30 )
MSMFLDQVTIDVKAGKGGDGMVAFRREKYVPDGGPAGGDGGRGGDVILIVDEGLRTLMDFRFNRHFKAQPGENGMSKGMHGRGSEDTYVKVPQGTTVRDAETGALLGDLIENGQTLVVAKGGRGGRGNIRFASPRNPAPEIAENGEPGQERKIELELKVLADVGLVGFPSVGKSTLLSVISSARPKIGAYHFTTLVPNLGMVTTSDGRSFAAADLPGLIEGASQGVGLGTQFLRHIERTRVILHVIDMSGMEGRDPYEDYLAINKELSTYNLRLLERPQIIVANKMDMPDAQENLVKFKEQLNKEKEDEFADDIPVFPISGVTRQGLDALLNATADLLEVTPEFPLYEEELEERNCTLWIQSRRS

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G4P_B_10(1LNZ)
OBG_BACSU
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GDP_A_2(2DBY)
?
[Raw transfer]
35 HHSearch 91.9374% -61 - C1 -1LNZ - OBG_BACSU -
1 PsiBlast_PDB 90.6170% -62 - C1 -1LNZ - OBG_BACSU -
37 HHSearch 89.5074% -51 - C1 -1LNZ 6.2 OBG_BACSU
25 Fugue 81.9047% -60 - C1 -1UDX - OBG_THET8 -
39 HHSearch 78.3849% -62 - C1 -1UDX - OBG_THET8 -
3 PsiBlast_PDB 77.3048% -53 - C1 -1UDX - OBG_THET8 -
36 HHSearch 77.1646% -57 - C1 -5M04 - OBG_ECOLI -
2 PsiBlast_PDB 70.7149% -40 - C1 -5M04 - OBG_ECOLI -
56 HHSearch 52.1324% -93 - C1 -2FA9 - SAR1B_CRIGR -
53 HHSearch 51.9519%-116 - C1 -1O3Y - ARF1_MOUSE -
45 HHSearch 51.0325% -32 - C1 -3IEV - ERA_AQUAE -
29 Fugue 48.8215% -81 - C1 -1PUI - ENGB_ECOLI -
46 HHSearch 48.4825% -26 * C1 *3R9X - ERA_AQUAE -
32 Fugue 44.4721% -88 - C1 -1M2O - SAR1_YEAST -
49 HHSearch 43.4221% -65 - C1 -1EGA - ERA_ECOLI -
47 HHSearch 42.7223% -18 - C1 -3B1V - ? -
20 PsiBlast_PDB 42.2424% -9 - C1 -3B1V - ? -
27 Fugue 41.9718% -32 - C1 -1EGA - ERA_ECOLI -
19 PsiBlast_PDB 41.9624% -7 - C1 -3B1X - ? -
15 PsiBlast_PDB 41.2729% 56 - C1 -3R9X - ERA_AQUAE -
4 PsiBlast_PDB 29.4235% -57 - C1 -2DBY 4.6 ?