@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XWM4: (2017-12-31 )
MKKTSRKVVIVGTGFVGTSIAYAMINQGISNELVLIDVNQEKAEGEALDLLDGMAWGDENVAVWSGGYEECKDADIVVITAGINQKPGQSRLDLVKTNASIMRQIVKEIMGSGFDGIIVVASNPVDILTYIAWNESGLPTSRVIGTGTTLDTTRFRKEIALKLKVDPRSVHGYILGEHGDSEVAAWSHTTVGGKPVFEIVEKDHRIAQDELDVIADKVRNAAYEIIDRKKATYYGIGMSTARIVKAILNNEQAVLPVSAYLTGEYDEKDIFTGVPSIVDENGVREVVELSINEEEKAMFSKSTSALREVLNTVL

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]




NAI_E_5(1I0Z)
LDHB_HUMAN
[Raw transfer]




NAD_B_6(3H3J)
LDH1_STAAC
[Raw transfer]




NAD_B_11(3VPH)
LDH_THECA
[Raw transfer]




NAI_G_7(1I0Z)
LDHB_HUMAN
[Raw transfer]




NAD_C_11(3WSW)
?
[Raw transfer]




NAD_A_3(3H3J)
LDH1_STAAC
[Raw transfer]




NAD_R_18(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_Q_17(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_B_8(3WSW)
?
[Raw transfer]




NAD_O_15(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_P_16(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_B_5(3D4P)
LDH1_STAAC
[Raw transfer]




NAD_A_3(3D4P)
LDH1_STAAC
[Raw transfer]




NAD_F_6(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_A_5(3WSW)
?
[Raw transfer]




NAD_G_7(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_D_6(3PQF)
LDH_BACSU
[Raw transfer]




NAD_A_8(1A5Z)
LDH_THEMA
[Raw transfer]




LNC_A_9(5LDH)
LDHB_PIG
[Raw transfer]




NAD_D_13(3WSW)
?
[Raw transfer]




LNC_B_13(5LDH)
LDHB_PIG
[Raw transfer]




NAD_A_8(1A5Z)
LDH_THEMA
[Raw transfer]




NAD_C_5(3PQF)
LDH_BACSU
[Raw transfer]




OXM_H_8(1I0Z)
LDHB_HUMAN
[Raw transfer]




AMP_B_4(2XXB)
LDH_THET8
[Raw transfer]




OXM_D_9(2XXJ)
LDH_THET8
[Raw transfer]




OXM_R_25(1LTH)
LDH2_BIFL2
[Raw transfer]




OXM_C_13(3VPH)
LDH_THECA
[Raw transfer]




OXM_F_6(1I0Z)
LDHB_HUMAN
[Raw transfer]




OXM_B_6(2XXJ)
LDH_THET8
[Raw transfer]




OXM_A_5(3VPH)
LDH_THECA
[Raw transfer]




OXM_C_9(2V7P)
LDH_THET8
[Raw transfer]




OXM_A_5(2V7P)
LDH_THET8
[Raw transfer]




OXM_B_7(2V7P)
LDH_THET8
[Raw transfer]




OXM_D_11(2V7P)
LDH_THET8
[Raw transfer]




OXM_D_15(3VPH)
LDH_THECA
[Raw transfer]




PGE_A_12(4Q3N)
?
[Raw transfer]




25 PsiBlast_CBE 96.1883%-134 - C4 -3WSV - ? -
23 PsiBlast_CBE 95.9983%-130 - C4 -3WSW 8.1 ?
22 PsiBlast_CBE 95.6883%-134 - C4 -3WSW 7.9 ?
2 PsiBlast_PDB 95.2883%-131 - C4 -3WSW 8.2 ?
21 PsiBlast_CBE 94.9283%-128 - C4 -3WSW 7.5 ?
1 PsiBlast_PDB 94.6083%-135 - C4 -3WSV - ? -
26 PsiBlast_CBE 93.8583%-128 - C4 -3WSV - ? -
24 PsiBlast_CBE 93.0183%-125 - C4 -3WSV - ? -
5 PsiBlast_PDB 86.4953%-141 - C4 -4LN1 - LDH1_BACCR -
6 PsiBlast_PDB 85.6554%-138 - C4 -3PQE - LDH_BACSU -
3 PsiBlast_PDB 84.5354%-132 - C4 -3PQD - LDH_BACSU -
45 PsiBlast_CBE 84.5251%-151 - C4 -1LDN - LDH_GEOSE -
7 PsiBlast_PDB 84.5054%-138 - C4 -3PQF - LDH_BACSU -
34 PsiBlast_CBE 83.9254%-142 - C4 -3PQF 8.5 LDH_BACSU
10 PsiBlast_PDB 83.7451%-151 - C4 -1LDN - LDH_GEOSE -
41 PsiBlast_CBE 83.5451%-146 - C4 -1LDN - LDH_GEOSE -
46 PsiBlast_CBE 83.1751%-141 - C4 -1LDN - LDH_GEOSE -
35 PsiBlast_CBE 83.0354%-141 - C4 -3PQF 8.2 LDH_BACSU
40 PsiBlast_CBE 82.8451%-148 - C4 -1LDN - LDH_GEOSE -
29 PsiBlast_CBE 82.8454%-136 - C4 -3PQD - LDH_BACSU -
74 PsiBlast_CBE 81.9147%-135 - C4 -3D4P 8.6 LDH1_STAAC
18 PsiBlast_PDB 81.8447%-130 - C4 -3H3J 8.0 LDH1_STAAC
20 PsiBlast_PDB 81.5947%-137 - C4 -3D4P 7.3 LDH1_STAAC
73 PsiBlast_CBE 81.1647%-130 - C4 -3H3J 8.8 LDH1_STAAC
84 PsiBlast_CBE 80.1642%-151 - C4 -1A5Z 7.5 LDH_THEMA
37 PsiBlast_CBE 79.4751%-150 - C4 -2LDB 7.3 LDH_GEOSE
9 PsiBlast_PDB 79.3951%-150 - C4 -2LDB 7.7 LDH_GEOSE
38 PsiBlast_CBE 79.2651%-150 - C4 -2LDB 7.7 LDH_GEOSE
36 PsiBlast_CBE 79.2151%-150 - C4 -2LDB 7.6 LDH_GEOSE
47 PsiBlast_CBE 78.7550%-119 - C4 -1EZ4 9.2 LDH_LACPE
49 PsiBlast_CBE 77.9450%-119 - C4 -1EZ4 9.7 LDH_LACPE
12 PsiBlast_PDB 76.4650%-129 - C4 -1EZ4 9.4 LDH_LACPE
48 PsiBlast_CBE 75.8250%-126 - C4 -1EZ4 9.4 LDH_LACPE
78 PsiBlast_CBE 74.9942% -96 - C4 -2XXJ 3.6 LDH_THET8
80 PsiBlast_CBE 74.8642% -96 - C4 -2XXJ 3.3 LDH_THET8
92 PsiBlast_CBE 73.2441%-100 - C4 -3VPH 2.2 LDH_THECA
139 HHSearch 73.1652% -8 - C4 -4Q3N 2.1 ?
93 PsiBlast_CBE 73.0741%-100 - C4 -3VPH 2.3 LDH_THECA
86 PsiBlast_CBE 72.8841% -92 - C4 -2V7P 3.2 LDH_THET8
94 PsiBlast_CBE 72.5741%-100 - C4 -3VPH 9.3 LDH_THECA
88 PsiBlast_CBE 72.1741% -97 - C4 -2V7P 2.8 LDH_THET8
106 PsiBlast_CBE 72.1137% -76 - C4 -1I0Z 10.3 LDHB_HUMAN
95 PsiBlast_CBE 71.6541% -98 - C4 -3VPH 2.6 LDH_THECA
105 PsiBlast_CBE 71.5837% -74 - C4 -1I0Z 10.2 LDHB_HUMAN
87 PsiBlast_CBE 71.0441%-106 - C4 -2V7P 2.2 LDH_THET8
138 HHSearch 70.6649% -32 - C4 -1EZ4 9.2 LDH_LACPE
85 PsiBlast_CBE 70.6241%-105 - C4 -2V7P 2.9 LDH_THET8
147 HHSearch 66.5442% -2 - C4 -1A5Z 7.5 LDH_THEMA
98 PsiBlast_CBE 66.0938% -50 - C4 -1LTH 2.4 LDH2_BIFL2