@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XWY8: (2018-01-01 )
MKVKKLSLQTLRRFIPYLTAYAKDIWLAVILGIINGIATVVMTLQIGQSIDQMIGEGQVRFNRLFHLLILFGGIVLINVVSQWLIQVLSNRLAYLSVAKLRKDAFAHLNRLPLRYYDQNSHGNIVSRFTNDMDNISIAISAAFNQLFSGVAIIILSFIFMMRLSPLLTLVVLCSTPIIFLVSWIVARASQTNFDRQQRIIGDISGFVTERIGNQKIVKAFQQEEASQQQFELLNADLYEKGQRAQFSSSLTNPSSRFVDHLAYLSIGLVGGLLALKSGSSITVGVISSFTIYSSQFSKPFIELSGITTQLQTAFSGLERAFDLIDQPEEKPDLPDAYALEPKNIKGKVSFDHVSFSYDPKQRLIEDFNFTAYPGQTIAIVGKTGAGKSTLVNLLMRFYDTTKGTITVDDHDIRSIQRDTLRKSFGMVLQDTWLFDSTLRENLRFGNPEASDAEINDALKASYMYEFVERLPEKLDTKIGGQGLKISDGQRQLLTIARTMISNPPMLILDEATSSVDTLTEKKIQQAFLAMMEGKTSFVIAHRLSTIKNADQILVMDQGAIVEMGTHDELLQKDGYYRRLYQAQFTAQ

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]



ATP_H_8(2FGK)

[Raw transfer]



ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]



ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_H_8(2FGJ)

[Raw transfer]



ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



12D_A_2(3B5J)

[Raw transfer]



ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]
1 PsiBlast_PDB 89.9342%-137 - C1 -3QF4 - Y288_THEMA -
99 HHSearch 89.1042%-135 - C1 -3QF4 - Y288_THEMA -
2 PsiBlast_PDB 88.9942%-134 - C1 -4Q4A - Y288_THEMA -
4 PsiBlast_PDB 87.3041%-133 - C1 -4Q4J - Y288_THEMA -
3 PsiBlast_PDB 84.6142% - - C1 -4Q4H - Y288_THEMA -
98 HHSearch 84.3042% - - C1 -4Q4H - Y288_THEMA -
20 PsiBlast_PDB 70.6330% 0 - C- -4M1M - MDR1A_MOUSE -
8 PsiBlast_PDB 70.1930% - - C1 -3B5X - MSBA_VIBCH -
91 HHSearch 70.1726%-131 - C1 -5MKK - ? -
87 HHSearch 68.6229% - - C1 -3B5X - MSBA_VIBCH -
95 HHSearch 62.5927% - - C1 -4Q4H - ? -
13 PsiBlast_PDB 62.4529% - - C1 -3B5Z 2.3 MSBA_SALTY
12 PsiBlast_PDB 62.4029% - - C1 -3B5Y 2.1 MSBA_SALTY
15 PsiBlast_PDB 61.2929% - - C1 -3B5W - MSBA_ECOLI -
100 HHSearch 61.1532% -9 - C1 -5MKK - ? -
85 HHSearch 59.0729% -41 - C1 -3B60 - MSBA_SALTY -
6 PsiBlast_PDB 58.9133% -11 - C1 -2ONJ - Y1866_STAAM -
21 PsiBlast_CBE 58.8833% -12 - C1 -2ONJ 6.2 Y1866_STAAM
5 PsiBlast_PDB 58.7533% -13 - C1 -2HYD 4.6 Y1866_STAAM
106 Fugue 58.6528% -41 - C1 -3B60 - MSBA_SALTY -
73 PsiBlast_CBE 40.6039% -28 - C1 -1XEF 6.3 HLYBP_ECOLX
58 PsiBlast_CBE 40.4940% -26 - C1 -2PMK 7.4
68 PsiBlast_CBE 40.0039% -23 - C1 -2FGJ 6.6 HLYBP_ECOLX
66 PsiBlast_CBE 39.9139% -25 - C1 -2FGJ 6.8 HLYBP_ECOLX
60 PsiBlast_CBE 38.7439% -24 - C1 -2FGK 6.9
62 PsiBlast_CBE 38.0439% -23 - C1 -2FGK 6.9 HLYBP_ECOLX
65 PsiBlast_CBE 37.5239% -19 - C1 -2FGJ 6.6
63 PsiBlast_CBE 36.4139% -20 - C1 -2FGK 7.0 HLYBP_ECOLX
61 PsiBlast_CBE 36.3339% -21 - C1 -2FGK 6.3 HLYBP_ECOLX