@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XX78: (2018-01-02 )
MKKTFSSLKRLARYIRPYRETFLLVILFTVLTVAFNVALPYVTGLPTTEISRNIANGESINFSYIFKCLIWITVVGIGYCISQLLSGVLMTNVVQSAMHDLRRDIEEKINRLPVSYFDKNQQGNILSRVTNDVDAVSGALQQAFIGIVNAILGITLAAAMMFYIQPMMALISMIMIPTSIWISKRVINASQKYFQSMQNSLGELNGYVQENMTGFSVLKVYGREKETLEGFKKVNHSLKYFGFRAAFISGLMMPLVQLTAYATYIGMAVLGSFYVITGAIVVGQLQAFIQYIWQISQPMGNVTQLSSVLQSASAATKRVFEILDEPEEKENKVDASLPETILGDVTFDHVDFAYDPKKPLIQDLNFEVKAGQTVAVVGPTGAGKTTLINLLMRFYDVDKGAIRIDGIDTKSMSRSDVRSLFGMVLQDAWLYQGTIADNIRFGKLDATDYEVVDAAKTANVDHFIRTMPDGYDMAINSEGDNVSLGQKQLLTIARAVVSDPKILILDEATSSVDTRLEALIQKAMDRVMEGRTSFVIAHRLSTIRDADLILVMDQGQIIEKGTHESLLAQGGFYEKLYNSQFAEEAE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ADP_A_2(5DGX)

[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



12D_A_2(3B5J)

[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]



ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]



ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]
137 HHSearch 83.4439%-148 - C1 -3QF4 - Y288_THEMA -
3 PsiBlast_PDB 81.7838% - - C1 -4Q4H - Y288_THEMA -
136 HHSearch 80.3839% - - C1 -4Q4H - Y288_THEMA -
134 HHSearch 78.0132% - - C1 -4Q4H - ? -
4 PsiBlast_PDB 73.1938% -48 - C1 -4Q4J - Y288_THEMA -
8 PsiBlast_PDB 72.6432% -58 - C1 -5MKK - ? -
9 PsiBlast_PDB 72.5032% - - C1 -3B5X - MSBA_VIBCH -
1 PsiBlast_PDB 72.2238% -43 - C1 -3QF4 - Y288_THEMA -
2 PsiBlast_PDB 69.9438% -45 - C1 -4Q4A - Y288_THEMA -
135 HHSearch 69.5931% -42 - C1 -5MKK - ? -
20 PsiBlast_PDB 68.5930% - * C1 *4RY2 - ? -
127 HHSearch 68.3231% - - C1 -3B5X - MSBA_VIBCH -
24 PsiBlast_CBE 67.0632% -24 - C1 -3QF4 - ? -
23 PsiBlast_CBE 66.5232% -24 - C1 -4Q4A - ? -
133 HHSearch 66.2828% -47 - C1 -4MRP - ATM1_NOVAD -
123 HHSearch 63.8628% -39 - C1 -4AYX - ABCBA_HUMAN -
132 HHSearch 63.5028% -45 - C1 -4MRS - ATM1_NOVAD -
29 PsiBlast_CBE 62.8132% - - C1 -3B5Z 2.3 MSBA_SALTY
12 PsiBlast_PDB 62.8132% - - C1 -3B5Z 2.3 MSBA_SALTY
30 PsiBlast_CBE 62.7832% - - C1 -3B5Z - MSBA_SALTY -
17 PsiBlast_PDB 60.6131% -16 - C1 -4AYX 5.4 ABCBA_HUMAN
48 PsiBlast_CBE 47.5042%-130 - C1 -5DGX 6.5