@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXB9: (2018-01-03 )
MPNKLLEVKGLKQYFNVGKKNEVHAVNDISFHIYEGETFGLVGESGSGKSTTGRTIIRLNEPTDGEILFDGQDITKIKDKKGLTKFRHDVQMIFQDPYASLNPRMKVRDIIAEGIDVNGLAKSSEERAKKVDDLLRTVGLNPSHGTRYPHEFSGGQRQRIGIARALAVKPRFIICDEPISALDVSIQAQVVNLLQDLQKEHQLTYLFIAHDLSMVKHISDRIGVMHNGLLLEMGTSDEIYNHGVHPYTESLLSAIPLPDPDHERKRRRIKYQPEPDDGQVRQLREIAPEHFVYATEQEVPYYAKKLKRQKESLLVAN

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_B_6(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_D_8(3B5Z)
MSBA_SALTY
[Raw transfer]




ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




3 PsiBlast_PDB 97.7434%-142 - C1 -3TUZ - METN_ECOLI -
24 PsiBlast_CBE 94.4934%-141 - C1 -3TUI - METN_ECOLI -
2 PsiBlast_PDB 93.7834%-135 - C1 -3TUI - METN_ECOLI -
21 PsiBlast_CBE 92.3334%-139 - C1 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 92.0134%-132 - C1 -3TUI - METN_ECOLI -
4 PsiBlast_PDB 91.2434%-140 - C1 -3TUJ - METN_ECOLI -
23 PsiBlast_CBE 91.1034%-137 - C1 -3TUZ - METN_ECOLI -
25 PsiBlast_CBE 90.5634%-130 - C1 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 89.8734%-134 - C1 -3TUZ - METN_ECOLI -
160 HHSearch 81.9235%-133 - C1 -3TUI - METN_ECOLI -
140 Fugue 80.0229%-124 - C1 -3TUZ - METN_ECOLI -
1 PsiBlast_PDB 78.7634%-135 - C1 -3DHW - METN_ECOLI -
141 Fugue 77.4127% -91 - C1 -1Z47 - ? -
157 HHSearch 73.5936%-138 - C1 -3DHW - METN_ECOLI -
45 PsiBlast_CBE 70.8433%-115 - C1 -2YYZ - ? -
161 HHSearch 70.5733% 0 - C- -4FWI - ? -
6 PsiBlast_PDB 68.2635%-112 - C1 -2IT1 - ? -
142 Fugue 67.8827% -95 - C1 -1OXS - ? -
165 HHSearch 66.6133%-118 - C1 -1Z47 - ? -
166 HHSearch 66.2735%-113 - C1 -2YYZ - ? -
14 PsiBlast_PDB 49.2134% -50 - C1 -1VCI 2.9 ?
91 PsiBlast_CBE 42.8034% - - C1 -3B5Z 2.3 MSBA_SALTY
89 PsiBlast_CBE 42.7534% - - C1 -3B5Z 2.3 MSBA_SALTY
90 PsiBlast_CBE 42.7434% - - C1 -3B5Z 2.9 MSBA_SALTY
88 PsiBlast_CBE 42.7434% - - C1 -3B5Z 2.5 MSBA_SALTY
95 PsiBlast_CBE 42.6434% - - C1 -3B5Y 2.1 MSBA_SALTY
94 PsiBlast_CBE 42.6434% - - C1 -3B5Y 1.9 MSBA_SALTY
93 PsiBlast_CBE 42.6434% - - C1 -3B5Y 1.9 MSBA_SALTY
92 PsiBlast_CBE 42.6234% - - C1 -3B5Y 1.9 MSBA_SALTY
53 PsiBlast_CBE 42.3833% -5 - C1 -1B0U 3.8 HISP_SALTY
133 PsiBlast_CBE 37.8434% -12 - C1 -2FGJ 6.0 HLYBP_ECOLX
131 PsiBlast_CBE 37.5534% -10 - C1 -2FGJ 5.5
125 PsiBlast_CBE 36.3734% -5 - C1 -2FGK 6.0 HLYBP_ECOLX
137 PsiBlast_CBE 36.1334% -14 - C1 -1XEF 5.5 HLYBP_ECOLX
138 PsiBlast_CBE 35.7334% -12 - C1 -1XEF 6.0 HLYBP_ECOLX
136 PsiBlast_CBE 35.6834% -10 - C1 -1XEF 5.7
134 PsiBlast_CBE 35.3234% -17 - C1 -2FGJ 5.6 HLYBP_ECOLX
124 PsiBlast_CBE 32.2834% -9 - C1 -2FGK 6.1 HLYBP_ECOLX
116 PsiBlast_CBE 31.5134% -9 - C1 -2PMK 5.2
123 PsiBlast_CBE 30.8434% -4 - C1 -2FGK 5.6 HLYBP_ECOLX
122 PsiBlast_CBE 30.3134% -9 - C1 -2FGK 6.1