@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXG8: (2018-01-04 )
MKWKKIYERLFFLILLVSLFFGGWQLISHYFQQQIVEQQESYLTKKAQLLIRQLDVENLQAAQNKTALEEFVHQSNERITLMDATGKILFDTNNETLNEQRNSRPEIKAVLNGGNLGSALRKSTTLNEDLLYVALPVKKSGQLEAILRIAEPTSGFLPRTESFRRWVFFFFLSFFLVLAGMIYYLIYQKNQPLKTVLPVLKKMVQNPNQAEVIMQTPDQWEELYQTINALSEQMSKMYRACTTTEEQLYTLLNELMIGVFLIDDADSRLLLLNPKMQLHLNVVSYQPEQRYTEVIQEPKLIQLIHQVTPEHPLIHQEITLTEGRQTLDLSLRYFTNSEGTGQILGVAYDLTKVRRLEKLQKDFVGNVSHELKTPVTSLIGFTETLLDGAKDDPQTLTSFLEIMQKDAIRLDKLIREIIQLSKDGENSYEIQTIYTEPYFQQIVQNYQPIIEKKRLTIRLIGKNEPFTTKTDILYPIIKNLIENAVQYSKSDSEIIIRYQATDDLSFSVQDFGIGIDIEDQERIFERFYRVDKARSRHSGGTGLGLAIVKDYVQLLNGTITVDSHLGTGSTFTVTIPKM

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ANP_B_7(4BIW)
CPXA_ECOLI
[Raw transfer]



ACP_A_3(5C93)
?
[Raw transfer]



ACP_A_3(5C93)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ACP_B_7(5C93)
?
[Raw transfer]



ATP_A_5(5LFK)
?
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ATP_B_9(5LFK)
?
[Raw transfer]



ADP_B_13(4JAV)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_B_8(3DGE)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_B_3(4ZKI)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]
46 HHSearch 85.6527% - - C4 -4I5S - ? -
5 PsiBlast_PDB 84.3529% - - C4 -4I5S - ? -
69 Fugue 77.0527% - - C4 -4I5S - ? -
49 HHSearch 63.3737% 19 - C4 -5C93 6.8 ?
4 PsiBlast_PDB 63.2736% 22 - C4 -5C93 6.8 ?
50 HHSearch 62.0936% 13 * C4 *4U7O 9.1 ?
2 PsiBlast_PDB 61.9036% 15 - C4 -4U7O 9.1 ?
22 PsiBlast_CBE 59.4736% -2 - C4 -4U7O 9.2 ?
24 PsiBlast_CBE 58.6832% 3 - C4 -4JAV 7.5 ?
23 PsiBlast_CBE 58.6836% -2 - C4 -5C93 7.5 ?
6 PsiBlast_PDB 58.0132% 4 - C4 -3DGE 7.2 ?
8 PsiBlast_PDB 57.9932% -4 - C4 -2C2A 7.5 ?
7 PsiBlast_PDB 57.7332% 5 - C4 -4JAV 8.7 ?
3 PsiBlast_PDB 57.1936% 12 - C4 -4ZKI - ? -
1 PsiBlast_PDB 57.0436% - - C4 -4U7N - ? -
15 PsiBlast_PDB 55.8832% 5 - C4 -4JAU 6.5 ?
25 PsiBlast_CBE 55.3632% 9 - C4 -3DGE 7.7 ?
14 PsiBlast_PDB 55.2132% 13 - C4 -4JAS 8.7 ?
11 PsiBlast_PDB 54.3431% 15 - C4 -4BIX - CPXA_ECOLI -
21 PsiBlast_CBE 52.9136% 4 - C4 -4ZKI 6.6 ?
56 HHSearch 51.0231% 20 - C4 -4JAV 8.7 ?
55 HHSearch 50.9931% 24 - C4 -2C2A 7.5 ?
18 PsiBlast_PDB 46.8831% 25 - C4 -4CB0 7.1 CPXA_ECOLI
20 PsiBlast_PDB 35.4945% -3 - C4 -3SL2 7.7