@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXL0: (2018-01-04 )
MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPMLEKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENGLDKYLQTADKLLEEYSAQDLVALLLKTTAKDPADAVPVKITPERPLPMQKKGYNKNGKRGGGNNRNRRDGGNYRGNKSKGGYSKNNNSQKDGGKRHNDKKRGFVIRSNND

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8OD_C_11(3NBF)
?
[Raw transfer]



8OD_D_13(3NBF)
?
[Raw transfer]



8OD_A_6(3NBF)
?
[Raw transfer]



8OD_B_8(3NBF)
?
[Raw transfer]



GOL_B_10(3FHT)
DD19B_HUMAN
[Raw transfer]



GOL_B_10(2GXS)
?
[Raw transfer]



GOL_D_5(4D25)
?
[Raw transfer]



NACID_H_4(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_H_2(2J0Q)
IF4A3_HUMAN
[Raw transfer]
-
NACID_E_4(2J0S)
IF4A3_HUMAN
[Raw transfer]
-
TLA_B_4(1VEC)
DDX6_HUMAN
[Raw transfer]



NACID_D_2(4D26)
?
[Raw transfer]
-
NACID_D_2(4D26)
?
[Raw transfer]
-
NACID_D_2(4D25)
?
[Raw transfer]
-
NACID_D_2(4D25)
?
[Raw transfer]
-
NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_E_1(2J0Q)
IF4A3_HUMAN
[Raw transfer]
-
NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_G_3(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_F_9(3EX7)
IF4A3_HUMAN
[Raw transfer]
-
NACID_F_1(2HYI)
IF4A3_HUMAN
[Raw transfer]
-
NACID_L_2(2HYI)
IF4A3_HUMAN
[Raw transfer]
-
NACID_F_2(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_J_10(3EX7)
IF4A3_HUMAN
[Raw transfer]
-
NACID_G_7(4DB2)
MS116_YEAST
[Raw transfer]
-
134 HHSearch 87.7064% -95 - C3 -5IVL - ? -
1 PsiBlast_PDB 86.9664% -96 - C3 -5IVL - ? -
145 HHSearch 73.9338%-122 - C3 -1S2M - DHH1_YEAST -
10 PsiBlast_PDB 73.1538%-125 - C3 -1S2M - DHH1_YEAST -
7 PsiBlast_PDB 72.2140% -83 - C3 -3EX7 11.9 IF4A3_HUMAN
4 PsiBlast_PDB 72.0840% -80 - C3 -2J0S 11.3 IF4A3_HUMAN
3 PsiBlast_PDB 71.6540% -78 - C3 -2J0Q 9.5 IF4A3_HUMAN
23 PsiBlast_CBE 71.5840% -79 - C3 -2XB2 - IF4A3_HUMAN -
6 PsiBlast_PDB 71.3240% -81 - C3 -2HYI 10.7 IF4A3_HUMAN
22 PsiBlast_CBE 71.1840% -78 - C3 -2J0Q 9.1 IF4A3_HUMAN
13 PsiBlast_PDB 71.1037%-128 - C3 -4BRU - DHH1_YEAST -
5 PsiBlast_PDB 71.0940% -77 - C3 -2XB2 - IF4A3_HUMAN -
25 PsiBlast_CBE 71.0540% -78 - C3 -2HYI 10.6 IF4A3_HUMAN
24 PsiBlast_CBE 71.0340% -77 - C3 -3EX7 9.4 IF4A3_HUMAN
150 HHSearch 70.9940% -93 - C3 -1FUU - IF4A_YEAST -
28 PsiBlast_CBE 70.9939% -87 - C3 -2VSX - IF4A_YEAST -
16 PsiBlast_PDB 70.9939% -86 - C3 -2VSX - IF4A_YEAST -
14 PsiBlast_PDB 70.9737%-132 - C3 -4BRW - DHH1_YEAST -
29 PsiBlast_CBE 70.9039% -88 - C3 -2VSO - IF4A_YEAST -
15 PsiBlast_PDB 70.5639% -88 - C3 -2VSO - IF4A_YEAST -
141 HHSearch 68.1339% -8 - C3 -4D26 12.3 ?
39 PsiBlast_CBE 67.6238% -11 - C3 -4D26 12.3 ?
140 HHSearch 67.5039% -2 - C3 -4D25 11.9 ?
40 PsiBlast_CBE 66.9738% -6 - C3 -4D25 11.9 ?
30 PsiBlast_CBE 65.0139% 12 - C3 -2DB3 11.1 VASA1_DROME
18 PsiBlast_PDB 64.4539% 12 - C3 -2DB3 11.1 VASA1_DROME
139 HHSearch 64.3739% 19 - C3 -2DB3 11.1 VASA1_DROME
31 PsiBlast_CBE 63.3339% 14 - C3 -2DB3 11.0 VASA1_DROME
32 PsiBlast_CBE 63.2339% 12 - C3 -2DB3 10.1 VASA1_DROME
68 PsiBlast_CBE 52.4246% -25 - C3 -3NBF 5.1 ?
65 PsiBlast_CBE 51.6946% -33 - C3 -3NBF 5.6 ?
66 PsiBlast_CBE 50.9946% -29 - C3 -3NBF 5.5 ?
62 PsiBlast_CBE 50.8147% -27 - C3 -2GXS 2.4 ?
67 PsiBlast_CBE 50.2946% -26 - C3 -3NBF 5.9 ?
87 PsiBlast_CBE 49.2738% -67 - C3 -1VEC 2.0 DDX6_HUMAN
124 PsiBlast_CBE 25.3442%-126 - C3 -4DB2 3.5 MS116_YEAST