@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXR6: (2018-01-05 )
MRMVDLIEKKRDGNELSKEEIEYIVTNYTNGKIPDYQVSALLMAIFYQDMTNEEITNLTLAIANSGDVIDLSSLEGIKVDKHSTGGVGDTTTLILAPLVASVGVTVAKMSGRGLGYTGGTLDKLEAIPGFQIELSDEEFVRIVNESKVAVIGQSGNLAPADKKLYALRDVTATVDSLPLIASSIMSKKIAAGADAIVLDVTTGDGAFMKNIEDARRLAKTMTSIGKLANRETVAVISDMSEPLGEAIGNSLEVVEAIETLQGNGPEDLVEMCYALGSQMVVLAGKAKTTDEARTLLQEALESGKALAKFKEMIQNQGGDPAIVEHPERILTARYTMELPAKQSGVVSKIVANELGIAAMMLGAGRKTKEEDIDHAVGLKLHKKIGDTVTKGESLLTIYSNDEEITSVIELLYKNIEIGESAMKPTLIHDIITE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

URA_B_7(1BRW)
PDP_GEOSE
[Raw transfer]




IUR_B_4(2WK6)
TYPH_HUMAN
[Raw transfer]




CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]




IUR_A_3(2WK6)
TYPH_HUMAN
[Raw transfer]




CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]




URI_B_6(4YYY)
TYPH_SALTY
[Raw transfer]




THM_B_20(4YEK)
TYPH_SALTY
[Raw transfer]




THM_A_2(3H5Q)
PDP_STAAC
[Raw transfer]




THM_A_2(3H5Q)
PDP_STAAC
[Raw transfer]




AZZ_A_11(4LHM)
TYPH_ECOLI
[Raw transfer]




THM_A_9(4YEK)
TYPH_SALTY
[Raw transfer]




0NP_A_2(4EAD)
TYPH_ECOLI
[Raw transfer]




0NP_A_2(4EAD)
TYPH_ECOLI
[Raw transfer]




CIT_A_4(4YYY)
TYPH_SALTY
[Raw transfer]




CIT_A_3(4YYY)
TYPH_SALTY
[Raw transfer]




EDO_A_5(4X46)
TYPH_SALTY
[Raw transfer]




22 PsiBlast_CBE 97.2762% -83 - C7 -1BRW - PDP_GEOSE -
3 PsiBlast_PDB 95.4761% -80 - C7 -3H5Q 4.0 PDP_STAAC
1 PsiBlast_PDB 95.4565% -82 - C7 -5EP8 - PDP_BACSU -
2 PsiBlast_PDB 94.4562% -82 - C7 -1BRW 2.6 PDP_GEOSE
4 PsiBlast_PDB 88.4847% -70 - C7 -2DSJ - ? -
46 HHSearch 87.3662% -23 * C7 *1BRW - PDP_GEOSE -
45 HHSearch 86.5164% -21 - C7 -3H5Q 4.0 PDP_STAAC
48 HHSearch 83.6647% -44 - C7 -2DSJ - ? -
32 PsiBlast_CBE 74.9939% -56 - C7 -2WK5 - TYPH_HUMAN -
50 HHSearch 70.6139% -25 - C7 -1UOU 5.7 TYPH_HUMAN
49 HHSearch 69.9140% 7 - C7 -4EAD 4.7 TYPH_ECOLI
20 PsiBlast_PDB 69.9139% -25 - C7 -1UOU 5.7 TYPH_HUMAN
11 PsiBlast_PDB 69.2743% 4 - C7 -4LHM 5.1 TYPH_ECOLI
9 PsiBlast_PDB 69.0543% 6 - C7 -4EAD 4.7 TYPH_ECOLI
30 PsiBlast_CBE 68.9940% -15 - C7 -2J0F - TYPH_HUMAN -
19 PsiBlast_PDB 68.6239% -12 - C7 -2WK6 3.9 TYPH_HUMAN
17 PsiBlast_PDB 68.4840% -13 - C7 -2J0F - TYPH_HUMAN -
29 PsiBlast_CBE 68.3740% -14 - C7 -2J0F - TYPH_HUMAN -
10 PsiBlast_PDB 68.3143% 6 - C7 -4EAF - TYPH_ECOLI -
31 PsiBlast_CBE 68.0239% -14 - C7 -2WK6 3.8 TYPH_HUMAN
14 PsiBlast_PDB 67.7643% 4 - C7 -4YEK 4.2 TYPH_SALTY
15 PsiBlast_PDB 66.8943% 2 - C7 -4YYY 3.4 TYPH_SALTY
12 PsiBlast_PDB 66.6843% 6 - C7 -4X46 2.8 TYPH_SALTY
24 PsiBlast_CBE 66.4443% 2 - C7 -4YYY 3.4 TYPH_SALTY
25 PsiBlast_CBE 65.3643% 6 - C7 -4YEK 4.0 TYPH_SALTY