@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXS0: (2018-01-05 )
MVQENIVIEMQNITKEFGTFKANDNINLQVKAGEIHALLGENGAGKSTLMNVLSGLLEPTSGKILMRGKEVKITSPTKANQLGIGMVHQHFMLVDAFTVTENIVLGSEPSRAGMLDHKKARKEIQKVSEQYGLSVNPDAYVRDISVGMEQRVEILKTLYRGADVLIFDEPTAVLTPQEIDELIVIMKELVKEGKSIILITHKLDEIKAVADRCTVIRRGKGIGTVNVKDVTSQQLADMMVGRTVSFKTMKKEAKPQEVVLSIENLVVKENRGLEAVKNLNLEVRAGEVLGIAGIDGNGQSELIQALTGLRKAESGHIKLKGEDITNKKPRKITEHGVGHVPEDRHKYGLVLDMTLSENIALQTYHQKPYSKNGMLNYSVMNEHARELIEEYDVRTTNELVPAKALSGGNQQKAIIAREVDRDPDLLIVANPTRGLDVGAIEFIHKRLIEQRDKYKAVLLISFELEEILNVSDRIAVIHEGEIVGIVDPKETSENELGLLMAGYTLEEARKELEKGAGAHE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_4(5X40)
CBIO_RHOCB
[Raw transfer]




ACP_B_6(5X40)
CBIO_RHOCB
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




73 HHSearch 63.7134%-107 * C4 *4YER 6.4 ?
1 PsiBlast_PDB 61.2837%-110 - C4 -2IT1 - ? -
51 HHSearch 59.5222% 51 - C4 -5KO2 - MDR1A_MOUSE -
52 HHSearch 59.1222% 50 - C4 -5KO2 - MDR1A_MOUSE -
53 HHSearch 58.1523% 34 - C2 -4F4C - PGP1_CAEEL -
10 PsiBlast_PDB 57.9530%-114 - C4 -4U00 - ? -
26 PsiBlast_CBE 55.8533% 0 - C4 -3TUI - METN_ECOLI -
4 PsiBlast_PDB 55.7333% -2 - C4 -3TUZ - METN_ECOLI -
11 PsiBlast_PDB 55.3230%-108 - C4 -4U02 - ? -
71 HHSearch 55.1028%-120 - C4 -2AWN - MALK_ECOLI -
70 HHSearch 54.0728%-123 - C4 -3RLF - MALK_ECOLI -
27 PsiBlast_CBE 53.3233% 0 - C4 -3TUI - METN_ECOLI -
3 PsiBlast_PDB 53.2633% 0 - C4 -3TUI - METN_ECOLI -
59 HHSearch 53.2421% 52 - C3 -3J5S - ETTA_ECOLI -
25 PsiBlast_CBE 53.1733% 3 - C4 -3TUI - METN_ECOLI -
24 PsiBlast_CBE 52.5633% 6 - C4 -3TUZ - METN_ECOLI -
23 PsiBlast_CBE 52.3933% 1 - C4 -3TUZ - METN_ECOLI -
38 Fugue 52.2926% 29 - C4 -3TUZ - METN_ECOLI -
19 PsiBlast_PDB 52.0730%-109 - C4 -1V43 - ? -
45 Fugue 51.5219% 33 - C4 -4F4C - PGP1_CAEEL -
32 PsiBlast_CBE 43.9231% 10 - C4 -5X40 7.9 CBIO_RHOCB
33 PsiBlast_CBE 42.1831% 14 - C4 -5X40 8.0 CBIO_RHOCB