@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXT4: (2018-01-05 )
MKKVLVTGCLGQIGSELITRLRQELGSENVIATDIRMPEVIEKNDIFEILDVMDYEKMRSIAEQYQVDTLIHLAALLSAVAEAKPQLAWNLNVTGLVNALEVAREFQLKFFTPSSIGAFGPNTPKDHTPQDTLQRPTTMYGVTKVAGELLCDYYYVKYGVDTRGVRFPGLISYATLPGGGTTDYAVDIYYSAIKEGKYTSFIDQGTSMDMMYMPDAIDAIIKLMNADPDRLVHRNAFNISAMSFDPEEIKASIQKIIPDFEMDYDVDPVRQSIAESWPNSLDVSCAQEEWGFSPKYDLDVMTKDMLEKLKEKLVETV

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_5(3WMX)
?
[Raw transfer]



NAD_C_9(3WMX)
?
[Raw transfer]



NAD_B_7(3WMX)
?
[Raw transfer]



NAD_A_5(3WMX)
?
[Raw transfer]



NAD_A_3(3A1N)
?
[Raw transfer]



NAD_B_9(2YY7)
?
[Raw transfer]



NAD_B_9(2YY7)
?
[Raw transfer]



NAD_A_5(2YY7)
?
[Raw transfer]



NAD_D_10(3WMX)
?
[Raw transfer]



GOL_A_11(2YY7)
?
[Raw transfer]



GOL_B_12(2YY7)
?
[Raw transfer]



PYR_A_4(3A4V)
?
[Raw transfer]



VAH_A_3(3AJR)
?
[Raw transfer]



THR_A_3(3A9W)
?
[Raw transfer]



PYR_B_7(3A4V)
?
[Raw transfer]



VAH_A_3(3AJR)
?
[Raw transfer]



THR_A_3(3A9W)
?
[Raw transfer]



VAH_B_6(3AJR)
?
[Raw transfer]



THR_B_6(3A9W)
?
[Raw transfer]



MES_B_10(2YY7)
?
[Raw transfer]
10 PsiBlast_PDB 89.0546%-112 - C1 -4YRA - TDH_MOUSE -
63 HHSearch 85.4946% -37 * C1 *3WMX 11.0 ?
23 PsiBlast_CBE 84.8146% -37 - C1 -3WMX 11.0 ?
2 PsiBlast_PDB 84.7446% -35 - C1 -3WMX 11.0 ?
22 PsiBlast_CBE 84.0646% -36 - C1 -3WMX 11.2 ?
29 PsiBlast_CBE 83.2846% -37 - C1 -3A9W 2.4 ?
21 PsiBlast_CBE 83.1446% -39 - C1 -3WMX 9.6 ?
59 HHSearch 83.1045% -23 - C1 -4YR9 - TDH_MOUSE -
26 PsiBlast_CBE 82.7946% -38 - C1 -3A4V 2.8 ?
28 PsiBlast_CBE 82.6746% -36 - C1 -3AJR 2.8 ?
71 HHSearch 82.4046% -34 - C1 -3A9W 3.0 ?
6 PsiBlast_PDB 82.4046% -37 - C1 -3A9W 3.0 ?
36 PsiBlast_CBE 82.3146% -26 - C1 -4YR9 - TDH_MOUSE -
76 HHSearch 82.1048% -19 - C1 -2YY7 12.1 ?
7 PsiBlast_PDB 82.0246% -38 - C1 -3AJR 3.1 ?
12 PsiBlast_PDB 82.0142% -35 - C1 -5LC1 - ? -
5 PsiBlast_PDB 81.9646% -39 - C1 -3A4V 2.4 ?
41 PsiBlast_CBE 81.9542% -36 - C1 -5LC1 - ? -
70 HHSearch 81.9446% -34 - C1 -3AJR 3.1 ?
40 PsiBlast_CBE 81.9342% -35 - C1 -5LC1 - ? -
4 PsiBlast_PDB 81.8546% -38 - C1 -3A1N 9.3 ?
25 PsiBlast_CBE 81.5747% -23 - C1 -2YY7 12.1 ?
3 PsiBlast_PDB 81.4547% -19 - C1 -2YY7 12.5 ?