@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXU6: (2018-01-06 )
MDENYQSEWTKSIPLKEQKKIIKRLMKFAKPFRRTFIVAILFAFALSVINVLLPRIIQTFMDDHLAKQSATTQVILFFAGMYLFGVIVKSIIWFFQWYLYSMASLKTYQYIRVKLFEKLHTLGMRYFDQTPAGSTVSRVTNDTETLFEFWYVFLMVLTGIFAVVSSFIAMFQINGEIALWTLVFLPILGIVIWYYQKFSSRIYRNMREKLSQLNTKLNESISGMRIIQQFRQEARLAKEFEQVNNEYLDTRYAMIKTNSILLSPIINFLYALAIALVLTLFGIDALHSPVEVGLIYAFTTYVQGFFNPMSQMMDFLSIFTDGMVAGSRILKIMDTEEYAPQQNPGADQMITSGKIEFRNVSFSYDGEHNVLNNISFVANPGETVALVGHTGSGKSSIINVLMRFYEFYEGQILIDDHDIREYPMEELRKKMGLVLQDAFLFYGDIAGNIRMMNPAITDEQIRHAAEFVQANKFIDELPKGYHSKVIEHGASYSSGQRQLITFARTIVTDPKILVLDEATANIDTETEGLIQEGLAKMRQGRTTIAIAHRLSTIRDAELILVLDKGHIVERGNHETLLAQNGLYADMYKLQSSGI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_B_6(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_D_8(3B5Z)
MSBA_SALTY
[Raw transfer]




4 PsiBlast_PDB 79.3835% - - C2 -4Q4H - Y288_THEMA -
13 PsiBlast_PDB 76.1430% - - C2 -3B5X - MSBA_VIBCH -
93 HHSearch 74.7434% - - C2 -4Q4H - Y288_THEMA -
30 PsiBlast_CBE 74.3732% - - C2 -3B5Y 1.9 MSBA_SALTY
9 PsiBlast_PDB 74.3632% - - C2 -3B5Y 2.1 MSBA_SALTY
31 PsiBlast_CBE 74.3532% - - C2 -3B5Y 1.9 MSBA_SALTY
29 PsiBlast_CBE 74.3532% - - C2 -3B5Y 1.9 MSBA_SALTY
10 PsiBlast_PDB 74.3432% - - C2 -3B5Z 2.3 MSBA_SALTY
28 PsiBlast_CBE 74.3132% - - C2 -3B5Z 2.9 MSBA_SALTY
27 PsiBlast_CBE 74.3132% - - C2 -3B5Z 2.3 MSBA_SALTY
26 PsiBlast_CBE 74.3132% - - C2 -3B5Z 2.5 MSBA_SALTY
86 HHSearch 73.9730% - - C2 -3B5X - MSBA_VIBCH -
1 PsiBlast_PDB 73.4335% -54 - C2 -4Q4J - Y288_THEMA -
92 HHSearch 72.7134% -66 - C2 -3QF4 - Y288_THEMA -
2 PsiBlast_PDB 72.4735% -50 - C2 -3QF4 - Y288_THEMA -
3 PsiBlast_PDB 72.2735% -51 - C2 -4Q4A - Y288_THEMA -
12 PsiBlast_PDB 72.1632% - - C2 -3B5W - MSBA_ECOLI -
94 HHSearch 71.5433% -25 - C2 -5MKK - ? -
6 PsiBlast_PDB 69.6432% -33 - C2 -2ONJ - Y1866_STAAM -
7 PsiBlast_PDB 69.6232% -32 - C2 -4A82 - Y1866_STAAM -